miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31894 3' -52.4 NC_006938.1 + 33052 0.67 0.879627
Target:  5'- --gCUCCGUccgUGGCGACCUguacagGGugG-CCg -3'
miRNA:   3'- ggaGAGGCA---ACUGUUGGA------CCugCaGG- -5'
31894 3' -52.4 NC_006938.1 + 37526 0.69 0.782956
Target:  5'- gCCg--CCGcUGGCAAgCUGGACGaggCCg -3'
miRNA:   3'- -GGagaGGCaACUGUUgGACCUGCa--GG- -5'
31894 3' -52.4 NC_006938.1 + 17543 0.69 0.789803
Target:  5'- aCCUC-CCGgugcGACAugagaacggcgacaACCUGGACGcggCCc -3'
miRNA:   3'- -GGAGaGGCaa--CUGU--------------UGGACCUGCa--GG- -5'
31894 3' -52.4 NC_006938.1 + 43062 0.68 0.842303
Target:  5'- --aCUCCGacgaGACGACCgggacgagcuacagcUGGACGUUCa -3'
miRNA:   3'- ggaGAGGCaa--CUGUUGG---------------ACCUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 53800 0.68 0.847448
Target:  5'- aCCgaagCUCCGUuggagccacUGGCAcCCUGGGCa-CCg -3'
miRNA:   3'- -GGa---GAGGCA---------ACUGUuGGACCUGcaGG- -5'
31894 3' -52.4 NC_006938.1 + 55534 0.68 0.848298
Target:  5'- aCCUCUCCGUcucggcgucgacguaUGGCAcuGCCaucccgaucagcuaUGGcACgGUCCg -3'
miRNA:   3'- -GGAGAGGCA---------------ACUGU--UGG--------------ACC-UG-CAGG- -5'
31894 3' -52.4 NC_006938.1 + 54472 0.67 0.864013
Target:  5'- gUUCUUCGaggUGACGacACCUgGGACGaCCg -3'
miRNA:   3'- gGAGAGGCa--ACUGU--UGGA-CCUGCaGG- -5'
31894 3' -52.4 NC_006938.1 + 62724 0.67 0.864013
Target:  5'- -aUCUUCGUggacGGCAACUUGGAgG-CCu -3'
miRNA:   3'- ggAGAGGCAa---CUGUUGGACCUgCaGG- -5'
31894 3' -52.4 NC_006938.1 + 40474 0.67 0.871942
Target:  5'- aCUcCUCCGacgGACGACCaGGGCcagCCg -3'
miRNA:   3'- gGA-GAGGCaa-CUGUUGGaCCUGca-GG- -5'
31894 3' -52.4 NC_006938.1 + 63076 0.69 0.762989
Target:  5'- gCCUCcCUGcUGGCAACgUGGGCuGUCg -3'
miRNA:   3'- -GGAGaGGCaACUGUUGgACCUG-CAGg -5'
31894 3' -52.4 NC_006938.1 + 30942 0.69 0.762989
Target:  5'- --aCUCCGUcUGGCGGCCaagaaGGACG-CCg -3'
miRNA:   3'- ggaGAGGCA-ACUGUUGGa----CCUGCaGG- -5'
31894 3' -52.4 NC_006938.1 + 23244 0.7 0.752802
Target:  5'- aCC-CUUCGaguggucGGCGACCgaggcGGACGUCCa -3'
miRNA:   3'- -GGaGAGGCaa-----CUGUUGGa----CCUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 38403 0.83 0.169626
Target:  5'- uCCUCUCCGgUGGCGGCCUGaccuucaACGUCCc -3'
miRNA:   3'- -GGAGAGGCaACUGUUGGACc------UGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 42159 0.77 0.372669
Target:  5'- aCUCggCCGUUGACcgguCCUGGAaggGUCCg -3'
miRNA:   3'- gGAGa-GGCAACUGuu--GGACCUg--CAGG- -5'
31894 3' -52.4 NC_006938.1 + 23424 0.74 0.506566
Target:  5'- cCCUCUCCGgaGAgcuccuCGACCUGGccCGUCa -3'
miRNA:   3'- -GGAGAGGCaaCU------GUUGGACCu-GCAGg -5'
31894 3' -52.4 NC_006938.1 + 57896 0.73 0.574318
Target:  5'- cCCUCUCCuacgcGACAucgacgauacggcugGCCUGG-CGUCCc -3'
miRNA:   3'- -GGAGAGGcaa--CUGU---------------UGGACCuGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 40513 0.72 0.635206
Target:  5'- uCCUCcgaUCCG--GACGACgaGGACGUCg -3'
miRNA:   3'- -GGAG---AGGCaaCUGUUGgaCCUGCAGg -5'
31894 3' -52.4 NC_006938.1 + 7035 0.71 0.655926
Target:  5'- gCUCaaUCCGagUGGCuuccgccAGCCUGGGCGUCg -3'
miRNA:   3'- gGAG--AGGCa-ACUG-------UUGGACCUGCAGg -5'
31894 3' -52.4 NC_006938.1 + 21698 0.7 0.732076
Target:  5'- gCUCUCUGagauaGACGACCUGGACc--- -3'
miRNA:   3'- gGAGAGGCaa---CUGUUGGACCUGcagg -5'
31894 3' -52.4 NC_006938.1 + 55412 0.7 0.742494
Target:  5'- gCUCgCCGcaGGCGGCCUGGGCuUCUc -3'
miRNA:   3'- gGAGaGGCaaCUGUUGGACCUGcAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.