miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31894 3' -52.4 NC_006938.1 + 2277 0.66 0.926158
Target:  5'- cCCUCgccCCaGUUGGCGAUCUucACGUCUu -3'
miRNA:   3'- -GGAGa--GG-CAACUGUUGGAccUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 4359 0.68 0.820044
Target:  5'- gCUCUCCGUUcACGuccuCCUGGAaCGgcagguaUCCg -3'
miRNA:   3'- gGAGAGGCAAcUGUu---GGACCU-GC-------AGG- -5'
31894 3' -52.4 NC_006938.1 + 7035 0.71 0.655926
Target:  5'- gCUCaaUCCGagUGGCuuccgccAGCCUGGGCGUCg -3'
miRNA:   3'- gGAG--AGGCa-ACUG-------UUGGACCUGCAGg -5'
31894 3' -52.4 NC_006938.1 + 8465 0.66 0.914197
Target:  5'- aCgUCUCCcc-GGCGuCCUGcGCGUCCg -3'
miRNA:   3'- -GgAGAGGcaaCUGUuGGACcUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 8988 0.69 0.773044
Target:  5'- ---aUCCcaUGGCGGCCUGGACGcggCCc -3'
miRNA:   3'- ggagAGGcaACUGUUGGACCUGCa--GG- -5'
31894 3' -52.4 NC_006938.1 + 9175 0.66 0.920313
Target:  5'- gCUCUggccaCCGccgUGGCGcGCagaUGGGCGUCCu -3'
miRNA:   3'- gGAGA-----GGCa--ACUGU-UGg--ACCUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 17229 0.67 0.863207
Target:  5'- uCCUgUCCGgcGAgGACCuuggugaccuccuUGGACagGUCCu -3'
miRNA:   3'- -GGAgAGGCaaCUgUUGG-------------ACCUG--CAGG- -5'
31894 3' -52.4 NC_006938.1 + 17543 0.69 0.789803
Target:  5'- aCCUC-CCGgugcGACAugagaacggcgacaACCUGGACGcggCCc -3'
miRNA:   3'- -GGAGaGGCaa--CUGU--------------UGGACCUGCa--GG- -5'
31894 3' -52.4 NC_006938.1 + 21698 0.7 0.732076
Target:  5'- gCUCUCUGagauaGACGACCUGGACc--- -3'
miRNA:   3'- gGAGAGGCaa---CUGUUGGACCUGcagg -5'
31894 3' -52.4 NC_006938.1 + 22363 0.69 0.782956
Target:  5'- gCUC-CCGgcGACGGCCUGGcagGCGaagCCc -3'
miRNA:   3'- gGAGaGGCaaCUGUUGGACC---UGCa--GG- -5'
31894 3' -52.4 NC_006938.1 + 23244 0.7 0.752802
Target:  5'- aCC-CUUCGaguggucGGCGACCgaggcGGACGUCCa -3'
miRNA:   3'- -GGaGAGGCaa-----CUGUUGGa----CCUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 23424 0.74 0.506566
Target:  5'- cCCUCUCCGgaGAgcuccuCGACCUGGccCGUCa -3'
miRNA:   3'- -GGAGAGGCaaCU------GUUGGACCu-GCAGg -5'
31894 3' -52.4 NC_006938.1 + 23501 0.69 0.792714
Target:  5'- gCUCUCCGgaGAgGGCCUucgGGGCGagCu -3'
miRNA:   3'- gGAGAGGCaaCUgUUGGA---CCUGCagG- -5'
31894 3' -52.4 NC_006938.1 + 29928 0.73 0.559267
Target:  5'- gUCUCUCCuUUGGC-ACCUGGcCGUgCa -3'
miRNA:   3'- -GGAGAGGcAACUGuUGGACCuGCAgG- -5'
31894 3' -52.4 NC_006938.1 + 30942 0.69 0.762989
Target:  5'- --aCUCCGUcUGGCGGCCaagaaGGACG-CCg -3'
miRNA:   3'- ggaGAGGCA-ACUGUUGGa----CCUGCaGG- -5'
31894 3' -52.4 NC_006938.1 + 33052 0.67 0.879627
Target:  5'- --gCUCCGUccgUGGCGACCUguacagGGugG-CCg -3'
miRNA:   3'- ggaGAGGCA---ACUGUUGGA------CCugCaGG- -5'
31894 3' -52.4 NC_006938.1 + 35794 0.66 0.901158
Target:  5'- uCC-CUUCGaggGGCAgaccaugcGCCagUGGGCGUCCa -3'
miRNA:   3'- -GGaGAGGCaa-CUGU--------UGG--ACCUGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 37526 0.69 0.782956
Target:  5'- gCCg--CCGcUGGCAAgCUGGACGaggCCg -3'
miRNA:   3'- -GGagaGGCaACUGUUgGACCUGCa--GG- -5'
31894 3' -52.4 NC_006938.1 + 38403 0.83 0.169626
Target:  5'- uCCUCUCCGgUGGCGGCCUGaccuucaACGUCCc -3'
miRNA:   3'- -GGAGAGGCaACUGUUGGACc------UGCAGG- -5'
31894 3' -52.4 NC_006938.1 + 39609 0.82 0.188847
Target:  5'- ----aCCGaacUUGGCAACCUGGGCGUCCa -3'
miRNA:   3'- ggagaGGC---AACUGUUGGACCUGCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.