Results 21 - 40 of 44 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 40474 | 0.67 | 0.871942 |
Target: 5'- aCUcCUCCGacgGACGACCaGGGCcagCCg -3' miRNA: 3'- gGA-GAGGCaa-CUGUUGGaCCUGca-GG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 40513 | 0.72 | 0.635206 |
Target: 5'- uCCUCcgaUCCG--GACGACgaGGACGUCg -3' miRNA: 3'- -GGAG---AGGCaaCUGUUGgaCCUGCAGg -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 41573 | 0.67 | 0.887062 |
Target: 5'- gCUCUCUGUguucuugGGCAACCUGccccggaucaACGUCg -3' miRNA: 3'- gGAGAGGCAa------CUGUUGGACc---------UGCAGg -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 41886 | 0.69 | 0.773044 |
Target: 5'- gCCUgUCCGUUGGCccugcuguCCUGGGCa--- -3' miRNA: 3'- -GGAgAGGCAACUGuu------GGACCUGcagg -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 42159 | 0.77 | 0.372669 |
Target: 5'- aCUCggCCGUUGACcgguCCUGGAaggGUCCg -3' miRNA: 3'- gGAGa-GGCAACUGuu--GGACCUg--CAGG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 43062 | 0.68 | 0.842303 |
Target: 5'- --aCUCCGacgaGACGACCgggacgagcuacagcUGGACGUUCa -3' miRNA: 3'- ggaGAGGCaa--CUGUUGG---------------ACCUGCAGG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 47808 | 0.69 | 0.802307 |
Target: 5'- aUCUCgUCCG-UGGCAACCgcgcugaGGACcuucaGUCCg -3' miRNA: 3'- -GGAG-AGGCaACUGUUGGa------CCUG-----CAGG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 50740 | 0.68 | 0.847448 |
Target: 5'- gCUCUCCGUgaacugGAgGAgguccuCCUGcGACGuUCCa -3' miRNA: 3'- gGAGAGGCAa-----CUgUU------GGAC-CUGC-AGG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 50949 | 0.66 | 0.913571 |
Target: 5'- aUCUCUCCGUcggUGcCGAgCUGGcggagcucgccccGCGUCa -3' miRNA: 3'- -GGAGAGGCA---ACuGUUgGACC-------------UGCAGg -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 51556 | 0.68 | 0.847448 |
Target: 5'- cCCggCUCCGgccGCGACgaGGAUGUCg -3' miRNA: 3'- -GGa-GAGGCaacUGUUGgaCCUGCAGg -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 52800 | 0.72 | 0.635206 |
Target: 5'- uCCUCcaggUCCG-UGGCGuCCUGGAUG-CCa -3' miRNA: 3'- -GGAG----AGGCaACUGUuGGACCUGCaGG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 53189 | 0.66 | 0.907812 |
Target: 5'- cCCaCUCCGccgUGAUGuCaaGGGCGUCCg -3' miRNA: 3'- -GGaGAGGCa--ACUGUuGgaCCUGCAGG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 53371 | 1.14 | 0.001349 |
Target: 5'- gCCUCUCCGUUGACAACCUGGACGUCCu -3' miRNA: 3'- -GGAGAGGCAACUGUUGGACCUGCAGG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 53494 | 0.67 | 0.877348 |
Target: 5'- -gUCUCgGUgagGGCAcugcuguccaggaaGCCcaGGACGUCCa -3' miRNA: 3'- ggAGAGgCAa--CUGU--------------UGGa-CCUGCAGG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 53800 | 0.68 | 0.847448 |
Target: 5'- aCCgaagCUCCGUuggagccacUGGCAcCCUGGGCa-CCg -3' miRNA: 3'- -GGa---GAGGCA---------ACUGUuGGACCUGcaGG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 54472 | 0.67 | 0.864013 |
Target: 5'- gUUCUUCGaggUGACGacACCUgGGACGaCCg -3' miRNA: 3'- gGAGAGGCa--ACUGU--UGGA-CCUGCaGG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 55412 | 0.7 | 0.742494 |
Target: 5'- gCUCgCCGcaGGCGGCCUGGGCuUCUc -3' miRNA: 3'- gGAGaGGCaaCUGUUGGACCUGcAGG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 55534 | 0.68 | 0.848298 |
Target: 5'- aCCUCUCCGUcucggcgucgacguaUGGCAcuGCCaucccgaucagcuaUGGcACgGUCCg -3' miRNA: 3'- -GGAGAGGCA---------------ACUGU--UGG--------------ACC-UG-CAGG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 56977 | 0.66 | 0.914197 |
Target: 5'- ----cCCGUUGACAuaacgaacGCUgGGACGUUCa -3' miRNA: 3'- ggagaGGCAACUGU--------UGGaCCUGCAGG- -5' |
|||||||
31894 | 3' | -52.4 | NC_006938.1 | + | 57562 | 0.71 | 0.677651 |
Target: 5'- --aCUCCGUucccugcUGAUAGuCCUGGucgACGUCCa -3' miRNA: 3'- ggaGAGGCA-------ACUGUU-GGACC---UGCAGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home