miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31894 5' -57.8 NC_006938.1 + 41140 0.7 0.377339
Target:  5'- -cGGAggaGGCgAGUGCgCUC-CCGAGACg -3'
miRNA:   3'- gaCCUg--UCG-UCACGgGAGuGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 45881 0.73 0.249809
Target:  5'- -cGGACGGCccUGUCCUCGCUGAcGGCg -3'
miRNA:   3'- gaCCUGUCGucACGGGAGUGGCU-CUG- -5'
31894 5' -57.8 NC_006938.1 + 46376 0.67 0.500548
Target:  5'- -cGGACGGCGGUGCgaucgacuaCCUCAuCCGGc-- -3'
miRNA:   3'- gaCCUGUCGUCACG---------GGAGU-GGCUcug -5'
31894 5' -57.8 NC_006938.1 + 48048 0.66 0.563143
Target:  5'- -cGGACGGCAucacUGagaugCUCACCGAGGCc -3'
miRNA:   3'- gaCCUGUCGUc---ACgg---GAGUGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 48207 0.67 0.521109
Target:  5'- gUGGACAGCGa-GUCCUCGuuCCGAguGACg -3'
miRNA:   3'- gACCUGUCGUcaCGGGAGU--GGCU--CUG- -5'
31894 5' -57.8 NC_006938.1 + 48351 0.67 0.552536
Target:  5'- -cGGGCGGCGGUgacgagcgcGUCCUguCgGAGACc -3'
miRNA:   3'- gaCCUGUCGUCA---------CGGGAguGgCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 53405 1.08 0.000674
Target:  5'- cCUGGACAGCAGUGCCCUCACCGAGACc -3'
miRNA:   3'- -GACCUGUCGUCACGGGAGUGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 54501 0.71 0.29676
Target:  5'- -aGGACAGUGGUGgCCUCgacuccgGCCGcGACa -3'
miRNA:   3'- gaCCUGUCGUCACgGGAG-------UGGCuCUG- -5'
31894 5' -57.8 NC_006938.1 + 55380 0.68 0.487377
Target:  5'- aUGGcaucacucgcaauuGCAGCAGUcggcGCgCUCGCCGcAGGCg -3'
miRNA:   3'- gACC--------------UGUCGUCA----CGgGAGUGGC-UCUG- -5'
31894 5' -57.8 NC_006938.1 + 55636 0.79 0.092324
Target:  5'- -gGGAUGGCAGUGCCauacgucgaCGCCGAGACg -3'
miRNA:   3'- gaCCUGUCGUCACGGga-------GUGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 55896 0.68 0.490402
Target:  5'- -aGGGCuccGGCcaGGUGCCCggaCACCGuGGCc -3'
miRNA:   3'- gaCCUG---UCG--UCACGGGa--GUGGCuCUG- -5'
31894 5' -57.8 NC_006938.1 + 60980 0.66 0.621149
Target:  5'- cCUGGcccagcaucgacACAGCGGUGgCCUCGauaucgacaacccagUCGAGAUu -3'
miRNA:   3'- -GACC------------UGUCGUCACgGGAGU---------------GGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 62054 0.67 0.541991
Target:  5'- uCUGGACGGCGuccagauugGCaCCgaCACUGAGACu -3'
miRNA:   3'- -GACCUGUCGUca-------CG-GGa-GUGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 62730 0.67 0.531512
Target:  5'- gUGGACGGCAacuuGgagGCCUcgggCACgGAGGCg -3'
miRNA:   3'- gACCUGUCGU----Ca--CGGGa---GUGgCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.