Results 21 - 34 of 34 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 62730 | 0.67 | 0.531512 |
Target: 5'- gUGGACGGCAacuuGgagGCCUcgggCACgGAGGCg -3' miRNA: 3'- gACCUGUCGU----Ca--CGGGa---GUGgCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 62054 | 0.67 | 0.541991 |
Target: 5'- uCUGGACGGCGuccagauugGCaCCgaCACUGAGACu -3' miRNA: 3'- -GACCUGUCGUca-------CG-GGa-GUGGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 48351 | 0.67 | 0.552536 |
Target: 5'- -cGGGCGGCGGUgacgagcgcGUCCUguCgGAGACc -3' miRNA: 3'- gaCCUGUCGUCA---------CGGGAguGgCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 16215 | 0.66 | 0.56208 |
Target: 5'- gUGuGGCAGCGGUcgacccagccGCCCUCccucagcGCCuuGAGACg -3' miRNA: 3'- gAC-CUGUCGUCA----------CGGGAG-------UGG--CUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 23582 | 0.66 | 0.563143 |
Target: 5'- cCUGGGCcgccuucuGCAGcuccucUGCCCgguCCGAGACc -3' miRNA: 3'- -GACCUGu-------CGUC------ACGGGaguGGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 48048 | 0.66 | 0.563143 |
Target: 5'- -cGGACGGCAucacUGagaugCUCACCGAGGCc -3' miRNA: 3'- gaCCUGUCGUc---ACgg---GAGUGGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 7629 | 0.66 | 0.595255 |
Target: 5'- aCUGGcaaGGCGGcccagGUCCUCAgCGAGAa -3' miRNA: 3'- -GACCug-UCGUCa----CGGGAGUgGCUCUg -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 40680 | 0.66 | 0.606029 |
Target: 5'- -cGGGgAGCGcaugagGUCCUCgACCGAGGCc -3' miRNA: 3'- gaCCUgUCGUca----CGGGAG-UGGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 29254 | 0.66 | 0.606029 |
Target: 5'- -aGGcCAGCGGUgGCauaugaCUCGgCCGAGGCc -3' miRNA: 3'- gaCCuGUCGUCA-CGg-----GAGU-GGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 28366 | 0.66 | 0.610346 |
Target: 5'- gCUGGACAGCuGUcccuccggccGCCCUacacggucaacccggCACCGGaguGGCg -3' miRNA: 3'- -GACCUGUCGuCA----------CGGGA---------------GUGGCU---CUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 6082 | 0.66 | 0.613586 |
Target: 5'- --aGGCAGUugcaaagaaggaagAGacgGCCCUgGCCGAGGCa -3' miRNA: 3'- gacCUGUCG--------------UCa--CGGGAgUGGCUCUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 28147 | 0.66 | 0.616826 |
Target: 5'- cCUGGGcCAGCGGcuUGCUgUCGCCcuuGGCa -3' miRNA: 3'- -GACCU-GUCGUC--ACGGgAGUGGcu-CUG- -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 36685 | 0.66 | 0.616826 |
Target: 5'- cCUGGAgAGaCAGaGCCCaCugCGAGGa -3' miRNA: 3'- -GACCUgUC-GUCaCGGGaGugGCUCUg -5' |
|||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 60980 | 0.66 | 0.621149 |
Target: 5'- cCUGGcccagcaucgacACAGCGGUGgCCUCGauaucgacaacccagUCGAGAUu -3' miRNA: 3'- -GACC------------UGUCGUCACgGGAGU---------------GGCUCUG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home