miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31894 5' -57.8 NC_006938.1 + 53405 1.08 0.000674
Target:  5'- cCUGGACAGCAGUGCCCUCACCGAGACc -3'
miRNA:   3'- -GACCUGUCGUCACGGGAGUGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 55636 0.79 0.092324
Target:  5'- -gGGAUGGCAGUGCCauacgucgaCGCCGAGACg -3'
miRNA:   3'- gaCCUGUCGUCACGGga-------GUGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 13255 0.78 0.103229
Target:  5'- -gGGACAGUgggagcacgaaGGUGUCCUCuACCGAGACc -3'
miRNA:   3'- gaCCUGUCG-----------UCACGGGAG-UGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 17992 0.76 0.147569
Target:  5'- -aGGGC-GCAGUcGUCCUCGCCGuAGACg -3'
miRNA:   3'- gaCCUGuCGUCA-CGGGAGUGGC-UCUG- -5'
31894 5' -57.8 NC_006938.1 + 45881 0.73 0.249809
Target:  5'- -cGGACGGCccUGUCCUCGCUGAcGGCg -3'
miRNA:   3'- gaCCUGUCGucACGGGAGUGGCU-CUG- -5'
31894 5' -57.8 NC_006938.1 + 54501 0.71 0.29676
Target:  5'- -aGGACAGUGGUGgCCUCgacuccgGCCGcGACa -3'
miRNA:   3'- gaCCUGUCGUCACgGGAG-------UGGCuCUG- -5'
31894 5' -57.8 NC_006938.1 + 12877 0.7 0.377339
Target:  5'- cCUGGAC--CAG-GCgCUCGCCGGGGCc -3'
miRNA:   3'- -GACCUGucGUCaCGgGAGUGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 41140 0.7 0.377339
Target:  5'- -cGGAggaGGCgAGUGCgCUC-CCGAGACg -3'
miRNA:   3'- gaCCUg--UCG-UCACGgGAGuGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 22996 0.69 0.413078
Target:  5'- gCUGGucCAGCAGUGCC-UCugUGAuuGGCa -3'
miRNA:   3'- -GACCu-GUCGUCACGGgAGugGCU--CUG- -5'
31894 5' -57.8 NC_006938.1 + 9752 0.69 0.422335
Target:  5'- -gGGACuGGguGUcacaGCCCUCgccaacgcgGCCGAGGCg -3'
miRNA:   3'- gaCCUG-UCguCA----CGGGAG---------UGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 35618 0.68 0.460563
Target:  5'- uCUGGuCAGCGaUGuCCCUCuCCGuGGCg -3'
miRNA:   3'- -GACCuGUCGUcAC-GGGAGuGGCuCUG- -5'
31894 5' -57.8 NC_006938.1 + 55380 0.68 0.487377
Target:  5'- aUGGcaucacucgcaauuGCAGCAGUcggcGCgCUCGCCGcAGGCg -3'
miRNA:   3'- gACC--------------UGUCGUCA----CGgGAGUGGC-UCUG- -5'
31894 5' -57.8 NC_006938.1 + 26744 0.68 0.490402
Target:  5'- -cGGucCAGCg--GCCCUCGCCGucuGGCa -3'
miRNA:   3'- gaCCu-GUCGucaCGGGAGUGGCu--CUG- -5'
31894 5' -57.8 NC_006938.1 + 18567 0.68 0.490402
Target:  5'- -aGGAU-GCucGUGCaCUUCGCCGAGAUa -3'
miRNA:   3'- gaCCUGuCGu-CACG-GGAGUGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 55896 0.68 0.490402
Target:  5'- -aGGGCuccGGCcaGGUGCCCggaCACCGuGGCc -3'
miRNA:   3'- gaCCUG---UCG--UCACGGGa--GUGGCuCUG- -5'
31894 5' -57.8 NC_006938.1 + 46376 0.67 0.500548
Target:  5'- -cGGACGGCGGUGCgaucgacuaCCUCAuCCGGc-- -3'
miRNA:   3'- gaCCUGUCGUCACG---------GGAGU-GGCUcug -5'
31894 5' -57.8 NC_006938.1 + 26579 0.67 0.510785
Target:  5'- cCUGGACA--AG-GCCCUCgucaaGCUGGGACu -3'
miRNA:   3'- -GACCUGUcgUCaCGGGAG-----UGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 37612 0.67 0.510785
Target:  5'- gCUGGAgcgaCAGguGgcaGCCCUCACCaAGGa -3'
miRNA:   3'- -GACCU----GUCguCa--CGGGAGUGGcUCUg -5'
31894 5' -57.8 NC_006938.1 + 48207 0.67 0.521109
Target:  5'- gUGGACAGCGa-GUCCUCGuuCCGAguGACg -3'
miRNA:   3'- gACCUGUCGUcaCGGGAGU--GGCU--CUG- -5'
31894 5' -57.8 NC_006938.1 + 62730 0.67 0.531512
Target:  5'- gUGGACGGCAacuuGgagGCCUcgggCACgGAGGCg -3'
miRNA:   3'- gACCUGUCGU----Ca--CGGGa---GUGgCUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.