miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31894 5' -57.8 NC_006938.1 + 60980 0.66 0.621149
Target:  5'- cCUGGcccagcaucgacACAGCGGUGgCCUCGauaucgacaacccagUCGAGAUu -3'
miRNA:   3'- -GACC------------UGUCGUCACgGGAGU---------------GGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 62730 0.67 0.531512
Target:  5'- gUGGACGGCAacuuGgagGCCUcgggCACgGAGGCg -3'
miRNA:   3'- gACCUGUCGU----Ca--CGGGa---GUGgCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 62054 0.67 0.541991
Target:  5'- uCUGGACGGCGuccagauugGCaCCgaCACUGAGACu -3'
miRNA:   3'- -GACCUGUCGUca-------CG-GGa-GUGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 48351 0.67 0.552536
Target:  5'- -cGGGCGGCGGUgacgagcgcGUCCUguCgGAGACc -3'
miRNA:   3'- gaCCUGUCGUCA---------CGGGAguGgCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 48048 0.66 0.563143
Target:  5'- -cGGACGGCAucacUGagaugCUCACCGAGGCc -3'
miRNA:   3'- gaCCUGUCGUc---ACgg---GAGUGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 7629 0.66 0.595255
Target:  5'- aCUGGcaaGGCGGcccagGUCCUCAgCGAGAa -3'
miRNA:   3'- -GACCug-UCGUCa----CGGGAGUgGCUCUg -5'
31894 5' -57.8 NC_006938.1 + 28366 0.66 0.610346
Target:  5'- gCUGGACAGCuGUcccuccggccGCCCUacacggucaacccggCACCGGaguGGCg -3'
miRNA:   3'- -GACCUGUCGuCA----------CGGGA---------------GUGGCU---CUG- -5'
31894 5' -57.8 NC_006938.1 + 6082 0.66 0.613586
Target:  5'- --aGGCAGUugcaaagaaggaagAGacgGCCCUgGCCGAGGCa -3'
miRNA:   3'- gacCUGUCG--------------UCa--CGGGAgUGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 36685 0.66 0.616826
Target:  5'- cCUGGAgAGaCAGaGCCCaCugCGAGGa -3'
miRNA:   3'- -GACCUgUC-GUCaCGGGaGugGCUCUg -5'
31894 5' -57.8 NC_006938.1 + 15948 0.67 0.531512
Target:  5'- -aGGGCAGgGGcgagGCCCgaUCGCCGAcGCg -3'
miRNA:   3'- gaCCUGUCgUCa---CGGG--AGUGGCUcUG- -5'
31894 5' -57.8 NC_006938.1 + 26579 0.67 0.510785
Target:  5'- cCUGGACA--AG-GCCCUCgucaaGCUGGGACu -3'
miRNA:   3'- -GACCUGUcgUCaCGGGAG-----UGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 37612 0.67 0.510785
Target:  5'- gCUGGAgcgaCAGguGgcaGCCCUCACCaAGGa -3'
miRNA:   3'- -GACCU----GUCguCa--CGGGAGUGGcUCUg -5'
31894 5' -57.8 NC_006938.1 + 13255 0.78 0.103229
Target:  5'- -gGGACAGUgggagcacgaaGGUGUCCUCuACCGAGACc -3'
miRNA:   3'- gaCCUGUCG-----------UCACGGGAG-UGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 45881 0.73 0.249809
Target:  5'- -cGGACGGCccUGUCCUCGCUGAcGGCg -3'
miRNA:   3'- gaCCUGUCGucACGGGAGUGGCU-CUG- -5'
31894 5' -57.8 NC_006938.1 + 12877 0.7 0.377339
Target:  5'- cCUGGAC--CAG-GCgCUCGCCGGGGCc -3'
miRNA:   3'- -GACCUGucGUCaCGgGAGUGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 9752 0.69 0.422335
Target:  5'- -gGGACuGGguGUcacaGCCCUCgccaacgcgGCCGAGGCg -3'
miRNA:   3'- gaCCUG-UCguCA----CGGGAG---------UGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 55380 0.68 0.487377
Target:  5'- aUGGcaucacucgcaauuGCAGCAGUcggcGCgCUCGCCGcAGGCg -3'
miRNA:   3'- gACC--------------UGUCGUCA----CGgGAGUGGC-UCUG- -5'
31894 5' -57.8 NC_006938.1 + 55896 0.68 0.490402
Target:  5'- -aGGGCuccGGCcaGGUGCCCggaCACCGuGGCc -3'
miRNA:   3'- gaCCUG---UCG--UCACGGGa--GUGGCuCUG- -5'
31894 5' -57.8 NC_006938.1 + 18567 0.68 0.490402
Target:  5'- -aGGAU-GCucGUGCaCUUCGCCGAGAUa -3'
miRNA:   3'- gaCCUGuCGu-CACG-GGAGUGGCUCUG- -5'
31894 5' -57.8 NC_006938.1 + 46376 0.67 0.500548
Target:  5'- -cGGACGGCGGUGCgaucgacuaCCUCAuCCGGc-- -3'
miRNA:   3'- gaCCUGUCGUCACG---------GGAGU-GGCUcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.