Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 28147 | 0.66 | 0.616826 |
Target: 5'- cCUGGGcCAGCGGcuUGCUgUCGCCcuuGGCa -3' miRNA: 3'- -GACCU-GUCGUC--ACGGgAGUGGcu-CUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 17992 | 0.76 | 0.147569 |
Target: 5'- -aGGGC-GCAGUcGUCCUCGCCGuAGACg -3' miRNA: 3'- gaCCUGuCGUCA-CGGGAGUGGC-UCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 22996 | 0.69 | 0.413078 |
Target: 5'- gCUGGucCAGCAGUGCC-UCugUGAuuGGCa -3' miRNA: 3'- -GACCu-GUCGUCACGGgAGugGCU--CUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 35618 | 0.68 | 0.460563 |
Target: 5'- uCUGGuCAGCGaUGuCCCUCuCCGuGGCg -3' miRNA: 3'- -GACCuGUCGUcAC-GGGAGuGGCuCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 48207 | 0.67 | 0.521109 |
Target: 5'- gUGGACAGCGa-GUCCUCGuuCCGAguGACg -3' miRNA: 3'- gACCUGUCGUcaCGGGAGU--GGCU--CUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 16215 | 0.66 | 0.56208 |
Target: 5'- gUGuGGCAGCGGUcgacccagccGCCCUCccucagcGCCuuGAGACg -3' miRNA: 3'- gAC-CUGUCGUCA----------CGGGAG-------UGG--CUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 55636 | 0.79 | 0.092324 |
Target: 5'- -gGGAUGGCAGUGCCauacgucgaCGCCGAGACg -3' miRNA: 3'- gaCCUGUCGUCACGGga-------GUGGCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 54501 | 0.71 | 0.29676 |
Target: 5'- -aGGACAGUGGUGgCCUCgacuccgGCCGcGACa -3' miRNA: 3'- gaCCUGUCGUCACgGGAG-------UGGCuCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 26744 | 0.68 | 0.490402 |
Target: 5'- -cGGucCAGCg--GCCCUCGCCGucuGGCa -3' miRNA: 3'- gaCCu-GUCGucaCGGGAGUGGCu--CUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 23582 | 0.66 | 0.563143 |
Target: 5'- cCUGGGCcgccuucuGCAGcuccucUGCCCgguCCGAGACc -3' miRNA: 3'- -GACCUGu-------CGUC------ACGGGaguGGCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 40680 | 0.66 | 0.606029 |
Target: 5'- -cGGGgAGCGcaugagGUCCUCgACCGAGGCc -3' miRNA: 3'- gaCCUgUCGUca----CGGGAG-UGGCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 29254 | 0.66 | 0.606029 |
Target: 5'- -aGGcCAGCGGUgGCauaugaCUCGgCCGAGGCc -3' miRNA: 3'- gaCCuGUCGUCA-CGg-----GAGU-GGCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 41140 | 0.7 | 0.377339 |
Target: 5'- -cGGAggaGGCgAGUGCgCUC-CCGAGACg -3' miRNA: 3'- gaCCUg--UCG-UCACGgGAGuGGCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 45881 | 0.73 | 0.249809 |
Target: 5'- -cGGACGGCccUGUCCUCGCUGAcGGCg -3' miRNA: 3'- gaCCUGUCGucACGGGAGUGGCU-CUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 55380 | 0.68 | 0.487377 |
Target: 5'- aUGGcaucacucgcaauuGCAGCAGUcggcGCgCUCGCCGcAGGCg -3' miRNA: 3'- gACC--------------UGUCGUCA----CGgGAGUGGC-UCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 48351 | 0.67 | 0.552536 |
Target: 5'- -cGGGCGGCGGUgacgagcgcGUCCUguCgGAGACc -3' miRNA: 3'- gaCCUGUCGUCA---------CGGGAguGgCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 62054 | 0.67 | 0.541991 |
Target: 5'- uCUGGACGGCGuccagauugGCaCCgaCACUGAGACu -3' miRNA: 3'- -GACCUGUCGUca-------CG-GGa-GUGGCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 62730 | 0.67 | 0.531512 |
Target: 5'- gUGGACGGCAacuuGgagGCCUcgggCACgGAGGCg -3' miRNA: 3'- gACCUGUCGU----Ca--CGGGa---GUGgCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 15948 | 0.67 | 0.531512 |
Target: 5'- -aGGGCAGgGGcgagGCCCgaUCGCCGAcGCg -3' miRNA: 3'- gaCCUGUCgUCa---CGGG--AGUGGCUcUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 55896 | 0.68 | 0.490402 |
Target: 5'- -aGGGCuccGGCcaGGUGCCCggaCACCGuGGCc -3' miRNA: 3'- gaCCUG---UCG--UCACGGGa--GUGGCuCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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