Results 21 - 34 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31894 | 5' | -57.8 | NC_006938.1 | + | 26744 | 0.68 | 0.490402 |
Target: 5'- -cGGucCAGCg--GCCCUCGCCGucuGGCa -3' miRNA: 3'- gaCCu-GUCGucaCGGGAGUGGCu--CUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 18567 | 0.68 | 0.490402 |
Target: 5'- -aGGAU-GCucGUGCaCUUCGCCGAGAUa -3' miRNA: 3'- gaCCUGuCGu-CACG-GGAGUGGCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 55380 | 0.68 | 0.487377 |
Target: 5'- aUGGcaucacucgcaauuGCAGCAGUcggcGCgCUCGCCGcAGGCg -3' miRNA: 3'- gACC--------------UGUCGUCA----CGgGAGUGGC-UCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 35618 | 0.68 | 0.460563 |
Target: 5'- uCUGGuCAGCGaUGuCCCUCuCCGuGGCg -3' miRNA: 3'- -GACCuGUCGUcAC-GGGAGuGGCuCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 9752 | 0.69 | 0.422335 |
Target: 5'- -gGGACuGGguGUcacaGCCCUCgccaacgcgGCCGAGGCg -3' miRNA: 3'- gaCCUG-UCguCA----CGGGAG---------UGGCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 22996 | 0.69 | 0.413078 |
Target: 5'- gCUGGucCAGCAGUGCC-UCugUGAuuGGCa -3' miRNA: 3'- -GACCu-GUCGUCACGGgAGugGCU--CUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 12877 | 0.7 | 0.377339 |
Target: 5'- cCUGGAC--CAG-GCgCUCGCCGGGGCc -3' miRNA: 3'- -GACCUGucGUCaCGgGAGUGGCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 41140 | 0.7 | 0.377339 |
Target: 5'- -cGGAggaGGCgAGUGCgCUC-CCGAGACg -3' miRNA: 3'- gaCCUg--UCG-UCACGgGAGuGGCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 54501 | 0.71 | 0.29676 |
Target: 5'- -aGGACAGUGGUGgCCUCgacuccgGCCGcGACa -3' miRNA: 3'- gaCCUGUCGUCACgGGAG-------UGGCuCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 45881 | 0.73 | 0.249809 |
Target: 5'- -cGGACGGCccUGUCCUCGCUGAcGGCg -3' miRNA: 3'- gaCCUGUCGucACGGGAGUGGCU-CUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 17992 | 0.76 | 0.147569 |
Target: 5'- -aGGGC-GCAGUcGUCCUCGCCGuAGACg -3' miRNA: 3'- gaCCUGuCGUCA-CGGGAGUGGC-UCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 13255 | 0.78 | 0.103229 |
Target: 5'- -gGGACAGUgggagcacgaaGGUGUCCUCuACCGAGACc -3' miRNA: 3'- gaCCUGUCG-----------UCACGGGAG-UGGCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 55636 | 0.79 | 0.092324 |
Target: 5'- -gGGAUGGCAGUGCCauacgucgaCGCCGAGACg -3' miRNA: 3'- gaCCUGUCGUCACGGga-------GUGGCUCUG- -5' |
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31894 | 5' | -57.8 | NC_006938.1 | + | 53405 | 1.08 | 0.000674 |
Target: 5'- cCUGGACAGCAGUGCCCUCACCGAGACc -3' miRNA: 3'- -GACCUGUCGUCACGGGAGUGGCUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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