Results 21 - 40 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31896 | 5' | -56.2 | NC_006938.1 | + | 31200 | 0.7 | 0.486532 |
Target: 5'- -cGGGACCUgauggACCU-GACGGACCGGu -3' miRNA: 3'- guUCCUGGAg----UGGAgCUGCCUGGUCc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 31599 | 0.67 | 0.696712 |
Target: 5'- -cAGGACCUC-CCUgacaaGCGGACCAa- -3' miRNA: 3'- guUCCUGGAGuGGAgc---UGCCUGGUcc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 31839 | 0.7 | 0.496542 |
Target: 5'- --uGGACCUC-CCagUGGCGGACCAc- -3' miRNA: 3'- guuCCUGGAGuGGa-GCUGCCUGGUcc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 35728 | 0.69 | 0.568869 |
Target: 5'- --cGcGCCaCACCUCGGCGGAcuucuCCAGGc -3' miRNA: 3'- guuCcUGGaGUGGAGCUGCCU-----GGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 36647 | 0.72 | 0.38365 |
Target: 5'- uCGAGG-CCUgccgcgcggaaCGCCgacgucucgCGACGGGCCAGGu -3' miRNA: 3'- -GUUCCuGGA-----------GUGGa--------GCUGCCUGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 37146 | 0.67 | 0.664895 |
Target: 5'- -cGGGGCCUCugguCCcacggUGACagGGGCCGGGu -3' miRNA: 3'- guUCCUGGAGu---GGa----GCUG--CCUGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 38734 | 0.75 | 0.24855 |
Target: 5'- -cGGGAuCCUCACCUgccagagCGGCGG-CCAGGu -3' miRNA: 3'- guUCCU-GGAGUGGA-------GCUGCCuGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 39044 | 0.68 | 0.632815 |
Target: 5'- --uGGACCUCGCC---ACGGGcauCCGGGa -3' miRNA: 3'- guuCCUGGAGUGGagcUGCCU---GGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 40463 | 0.71 | 0.4571 |
Target: 5'- uCGGGGACgaCAcuCCUcCGACGGAcgaCCAGGg -3' miRNA: 3'- -GUUCCUGgaGU--GGA-GCUGCCU---GGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 40595 | 0.75 | 0.249175 |
Target: 5'- uCGAGGACCUCAUgcgCUCcccggagcuGGCGGACCGGu -3' miRNA: 3'- -GUUCCUGGAGUG---GAG---------CUGCCUGGUCc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 40754 | 0.66 | 0.748416 |
Target: 5'- gCAAGGcgcagcccaACCgggACCUCGACGGugUcaAGGc -3' miRNA: 3'- -GUUCC---------UGGag-UGGAGCUGCCugG--UCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 42270 | 0.75 | 0.249175 |
Target: 5'- gCAAGGACCUCGCagaUCGGacccuuccaGGACCGGu -3' miRNA: 3'- -GUUCCUGGAGUGg--AGCUg--------CCUGGUCc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 44024 | 0.67 | 0.661694 |
Target: 5'- --cGG-UCUgGCCUCGGCGGgaauggagguggcaACCGGGa -3' miRNA: 3'- guuCCuGGAgUGGAGCUGCC--------------UGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 45736 | 0.66 | 0.748416 |
Target: 5'- ---cGGCCUCccgGCCUCGAuCGG-UCAGGu -3' miRNA: 3'- guucCUGGAG---UGGAGCU-GCCuGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 46898 | 0.69 | 0.57945 |
Target: 5'- aGAGGAuCCggACgUCGGCGGGCUgcAGGa -3' miRNA: 3'- gUUCCU-GGagUGgAGCUGCCUGG--UCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 48285 | 0.66 | 0.758464 |
Target: 5'- --uGGACCugcguguugUCGCC-CGugGGAUUGGGc -3' miRNA: 3'- guuCCUGG---------AGUGGaGCugCCUGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 51457 | 0.71 | 0.438018 |
Target: 5'- gGAGGGCUUCGacauCCUCGucGCGGccggaGCCGGGg -3' miRNA: 3'- gUUCCUGGAGU----GGAGC--UGCC-----UGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 51984 | 0.66 | 0.707213 |
Target: 5'- gGAGGACCUCGCagaGACcguGGACgAGu -3' miRNA: 3'- gUUCCUGGAGUGgagCUG---CCUGgUCc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 53172 | 0.68 | 0.61141 |
Target: 5'- uCAAGGGCgUCcgauCCaaaGCGGACCGGGa -3' miRNA: 3'- -GUUCCUGgAGu---GGagcUGCCUGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 53997 | 1.09 | 0.001103 |
Target: 5'- uCAAGGACCUCACCUCGACGGACCAGGu -3' miRNA: 3'- -GUUCCUGGAGUGGAGCUGCCUGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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