Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31896 | 5' | -56.2 | NC_006938.1 | + | 1407 | 0.69 | 0.57945 |
Target: 5'- gCGGGGAUCggagacaCGCCggUCGccACGGGCCGGGu -3' miRNA: 3'- -GUUCCUGGa------GUGG--AGC--UGCCUGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 1675 | 0.79 | 0.140203 |
Target: 5'- aCAAGGACaagGCCUgGugGGACCGGGa -3' miRNA: 3'- -GUUCCUGgagUGGAgCugCCUGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 2423 | 0.7 | 0.506643 |
Target: 5'- ---uGACCUCGuCCUCGACGGaguccuccccGCCgAGGa -3' miRNA: 3'- guucCUGGAGU-GGAGCUGCC----------UGG-UCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 2997 | 0.68 | 0.590073 |
Target: 5'- --cGGACCUgauggACCU-GACGGACCGGu -3' miRNA: 3'- guuCCUGGAg----UGGAgCUGCCUGGUCc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 4956 | 0.67 | 0.664895 |
Target: 5'- gAAGGGCUUCGCCgu--CGGAgaCAGGa -3' miRNA: 3'- gUUCCUGGAGUGGagcuGCCUg-GUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 6744 | 0.67 | 0.643521 |
Target: 5'- -cGGGACgagCUCuuugCGAUGGGCCAGGg -3' miRNA: 3'- guUCCUG---GAGuggaGCUGCCUGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 8207 | 0.72 | 0.375033 |
Target: 5'- cCAGGGgcagACCUCuguCCUCG-CGGACgCGGGu -3' miRNA: 3'- -GUUCC----UGGAGu--GGAGCuGCCUG-GUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 15461 | 0.67 | 0.664895 |
Target: 5'- --uGGGCCgcugGCCUCGACcaGGAgCGGGc -3' miRNA: 3'- guuCCUGGag--UGGAGCUG--CCUgGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 15842 | 0.66 | 0.757465 |
Target: 5'- -cAGGACCUgGucauguuCCUgGACGaGCCGGGu -3' miRNA: 3'- guUCCUGGAgU-------GGAgCUGCcUGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 16054 | 0.68 | 0.632815 |
Target: 5'- aGAGGAUCUCgACCgcgUCGGCGuAUCGGGc -3' miRNA: 3'- gUUCCUGGAG-UGG---AGCUGCcUGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 17145 | 0.75 | 0.268555 |
Target: 5'- cCAAGGuCCUCGCCg-GACaGGACCuGGa -3' miRNA: 3'- -GUUCCuGGAGUGGagCUG-CCUGGuCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 17220 | 0.67 | 0.686152 |
Target: 5'- gCGAGGACCUUggugACCUCcuUGGA-CAGGu -3' miRNA: 3'- -GUUCCUGGAG----UGGAGcuGCCUgGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 17972 | 0.66 | 0.727996 |
Target: 5'- aCAGGGcauCCagGCCgUGugGGACCuGGa -3' miRNA: 3'- -GUUCCu--GGagUGGaGCugCCUGGuCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 19512 | 0.66 | 0.758464 |
Target: 5'- gCGAcGACCUCGCCaCGugcaACGGAUaCAGGa -3' miRNA: 3'- -GUUcCUGGAGUGGaGC----UGCCUG-GUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 19545 | 0.73 | 0.32614 |
Target: 5'- uCGGGGACUgcgugUGCCUCG-CGGACgGGGa -3' miRNA: 3'- -GUUCCUGGa----GUGGAGCuGCCUGgUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 19712 | 0.67 | 0.696712 |
Target: 5'- -cAGGACC-CGCCg-GAccCGGACCAGc -3' miRNA: 3'- guUCCUGGaGUGGagCU--GCCUGGUCc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 20454 | 0.66 | 0.738257 |
Target: 5'- gGAGcGGCgUguCCUCG-CGGACCGGc -3' miRNA: 3'- gUUC-CUGgAguGGAGCuGCCUGGUCc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 22267 | 0.67 | 0.675543 |
Target: 5'- gAAGGGCUUCGCCUgccaGGCcgucGCCGGGa -3' miRNA: 3'- gUUCCUGGAGUGGAg---CUGcc--UGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 26659 | 0.68 | 0.600729 |
Target: 5'- aCGAGGGCCuuguccagguUCGCCUCGGuggcguaGGACUuGGa -3' miRNA: 3'- -GUUCCUGG----------AGUGGAGCUg------CCUGGuCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 29445 | 0.67 | 0.654218 |
Target: 5'- cCAAGGGCgUCACagaggcaugcugUUCGACGaGACCAa- -3' miRNA: 3'- -GUUCCUGgAGUG------------GAGCUGC-CUGGUcc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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