miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31896 5' -56.2 NC_006938.1 + 19712 0.67 0.696712
Target:  5'- -cAGGACC-CGCCg-GAccCGGACCAGc -3'
miRNA:   3'- guUCCUGGaGUGGagCU--GCCUGGUCc -5'
31896 5' -56.2 NC_006938.1 + 2997 0.68 0.590073
Target:  5'- --cGGACCUgauggACCU-GACGGACCGGu -3'
miRNA:   3'- guuCCUGGAg----UGGAgCUGCCUGGUCc -5'
31896 5' -56.2 NC_006938.1 + 59517 0.67 0.643521
Target:  5'- --cGGAUgccaGCCUCGucCGGGCCAGGc -3'
miRNA:   3'- guuCCUGgag-UGGAGCu-GCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 6744 0.67 0.643521
Target:  5'- -cGGGACgagCUCuuugCGAUGGGCCAGGg -3'
miRNA:   3'- guUCCUG---GAGuggaGCUGCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 29445 0.67 0.654218
Target:  5'- cCAAGGGCgUCACagaggcaugcugUUCGACGaGACCAa- -3'
miRNA:   3'- -GUUCCUGgAGUG------------GAGCUGC-CUGGUcc -5'
31896 5' -56.2 NC_006938.1 + 44024 0.67 0.661694
Target:  5'- --cGG-UCUgGCCUCGGCGGgaauggagguggcaACCGGGa -3'
miRNA:   3'- guuCCuGGAgUGGAGCUGCC--------------UGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 15461 0.67 0.664895
Target:  5'- --uGGGCCgcugGCCUCGACcaGGAgCGGGc -3'
miRNA:   3'- guuCCUGGag--UGGAGCUG--CCUgGUCC- -5'
31896 5' -56.2 NC_006938.1 + 22267 0.67 0.675543
Target:  5'- gAAGGGCUUCGCCUgccaGGCcgucGCCGGGa -3'
miRNA:   3'- gUUCCUGGAGUGGAg---CUGcc--UGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 31599 0.67 0.696712
Target:  5'- -cAGGACCUC-CCUgacaaGCGGACCAa- -3'
miRNA:   3'- guUCCUGGAGuGGAgc---UGCCUGGUcc -5'
31896 5' -56.2 NC_006938.1 + 1407 0.69 0.57945
Target:  5'- gCGGGGAUCggagacaCGCCggUCGccACGGGCCGGGu -3'
miRNA:   3'- -GUUCCUGGa------GUGG--AGC--UGCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 55515 0.69 0.54786
Target:  5'- gAGGGGCCaCGCCUCGGC-GACCu-- -3'
miRNA:   3'- gUUCCUGGaGUGGAGCUGcCUGGucc -5'
31896 5' -56.2 NC_006938.1 + 31200 0.7 0.486532
Target:  5'- -cGGGACCUgauggACCU-GACGGACCGGu -3'
miRNA:   3'- guUCCUGGAg----UGGAgCUGCCUGGUCc -5'
31896 5' -56.2 NC_006938.1 + 1675 0.79 0.140203
Target:  5'- aCAAGGACaagGCCUgGugGGACCGGGa -3'
miRNA:   3'- -GUUCCUGgagUGGAgCugCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 61133 0.78 0.173592
Target:  5'- gCGAGGACUUCACCUgGGaGGGCUGGGc -3'
miRNA:   3'- -GUUCCUGGAGUGGAgCUgCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 61362 0.76 0.224575
Target:  5'- gGAGGGCCUCGacauggaggucuuCCUCGACGGGgucagcCUAGGa -3'
miRNA:   3'- gUUCCUGGAGU-------------GGAGCUGCCU------GGUCC- -5'
31896 5' -56.2 NC_006938.1 + 40595 0.75 0.249175
Target:  5'- uCGAGGACCUCAUgcgCUCcccggagcuGGCGGACCGGu -3'
miRNA:   3'- -GUUCCUGGAGUG---GAG---------CUGCCUGGUCc -5'
31896 5' -56.2 NC_006938.1 + 17145 0.75 0.268555
Target:  5'- cCAAGGuCCUCGCCg-GACaGGACCuGGa -3'
miRNA:   3'- -GUUCCuGGAGUGGagCUG-CCUGGuCC- -5'
31896 5' -56.2 NC_006938.1 + 19545 0.73 0.32614
Target:  5'- uCGGGGACUgcgugUGCCUCG-CGGACgGGGa -3'
miRNA:   3'- -GUUCCUGGa----GUGGAGCuGCCUGgUCC- -5'
31896 5' -56.2 NC_006938.1 + 51457 0.71 0.438018
Target:  5'- gGAGGGCUUCGacauCCUCGucGCGGccggaGCCGGGg -3'
miRNA:   3'- gUUCCUGGAGU----GGAGC--UGCC-----UGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 40463 0.71 0.4571
Target:  5'- uCGGGGACgaCAcuCCUcCGACGGAcgaCCAGGg -3'
miRNA:   3'- -GUUCCUGgaGU--GGA-GCUGCCU---GGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.