miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31896 5' -56.2 NC_006938.1 + 48285 0.66 0.758464
Target:  5'- --uGGACCugcguguugUCGCC-CGugGGAUUGGGc -3'
miRNA:   3'- guuCCUGG---------AGUGGaGCugCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 35728 0.69 0.568869
Target:  5'- --cGcGCCaCACCUCGGCGGAcuucuCCAGGc -3'
miRNA:   3'- guuCcUGGaGUGGAGCUGCCU-----GGUCC- -5'
31896 5' -56.2 NC_006938.1 + 53172 0.68 0.61141
Target:  5'- uCAAGGGCgUCcgauCCaaaGCGGACCGGGa -3'
miRNA:   3'- -GUUCCUGgAGu---GGagcUGCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 39044 0.68 0.632815
Target:  5'- --uGGACCUCGCC---ACGGGcauCCGGGa -3'
miRNA:   3'- guuCCUGGAGUGGagcUGCCU---GGUCC- -5'
31896 5' -56.2 NC_006938.1 + 4956 0.67 0.664895
Target:  5'- gAAGGGCUUCGCCgu--CGGAgaCAGGa -3'
miRNA:   3'- gUUCCUGGAGUGGagcuGCCUg-GUCC- -5'
31896 5' -56.2 NC_006938.1 + 37146 0.67 0.664895
Target:  5'- -cGGGGCCUCugguCCcacggUGACagGGGCCGGGu -3'
miRNA:   3'- guUCCUGGAGu---GGa----GCUG--CCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 38734 0.75 0.24855
Target:  5'- -cGGGAuCCUCACCUgccagagCGGCGG-CCAGGu -3'
miRNA:   3'- guUCCU-GGAGUGGA-------GCUGCCuGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 42270 0.75 0.249175
Target:  5'- gCAAGGACCUCGCagaUCGGacccuuccaGGACCGGu -3'
miRNA:   3'- -GUUCCUGGAGUGg--AGCUg--------CCUGGUCc -5'
31896 5' -56.2 NC_006938.1 + 31839 0.7 0.496542
Target:  5'- --uGGACCUC-CCagUGGCGGACCAc- -3'
miRNA:   3'- guuCCUGGAGuGGa-GCUGCCUGGUcc -5'
31896 5' -56.2 NC_006938.1 + 46898 0.69 0.57945
Target:  5'- aGAGGAuCCggACgUCGGCGGGCUgcAGGa -3'
miRNA:   3'- gUUCCU-GGagUGgAGCUGCCUGG--UCC- -5'
31896 5' -56.2 NC_006938.1 + 16054 0.68 0.632815
Target:  5'- aGAGGAUCUCgACCgcgUCGGCGuAUCGGGc -3'
miRNA:   3'- gUUCCUGGAG-UGG---AGCUGCcUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 45736 0.66 0.748416
Target:  5'- ---cGGCCUCccgGCCUCGAuCGG-UCAGGu -3'
miRNA:   3'- guucCUGGAG---UGGAGCU-GCCuGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 36647 0.72 0.38365
Target:  5'- uCGAGG-CCUgccgcgcggaaCGCCgacgucucgCGACGGGCCAGGu -3'
miRNA:   3'- -GUUCCuGGA-----------GUGGa--------GCUGCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 20454 0.66 0.738257
Target:  5'- gGAGcGGCgUguCCUCG-CGGACCGGc -3'
miRNA:   3'- gUUC-CUGgAguGGAGCuGCCUGGUCc -5'
31896 5' -56.2 NC_006938.1 + 26659 0.68 0.600729
Target:  5'- aCGAGGGCCuuguccagguUCGCCUCGGuggcguaGGACUuGGa -3'
miRNA:   3'- -GUUCCUGG----------AGUGGAGCUg------CCUGGuCC- -5'
31896 5' -56.2 NC_006938.1 + 8207 0.72 0.375033
Target:  5'- cCAGGGgcagACCUCuguCCUCG-CGGACgCGGGu -3'
miRNA:   3'- -GUUCC----UGGAGu--GGAGCuGCCUG-GUCC- -5'
31896 5' -56.2 NC_006938.1 + 17220 0.67 0.686152
Target:  5'- gCGAGGACCUUggugACCUCcuUGGA-CAGGu -3'
miRNA:   3'- -GUUCCUGGAG----UGGAGcuGCCUgGUCC- -5'
31896 5' -56.2 NC_006938.1 + 2423 0.7 0.506643
Target:  5'- ---uGACCUCGuCCUCGACGGaguccuccccGCCgAGGa -3'
miRNA:   3'- guucCUGGAGU-GGAGCUGCC----------UGG-UCC- -5'
31896 5' -56.2 NC_006938.1 + 6744 0.67 0.643521
Target:  5'- -cGGGACgagCUCuuugCGAUGGGCCAGGg -3'
miRNA:   3'- guUCCUG---GAGuggaGCUGCCUGGUCC- -5'
31896 5' -56.2 NC_006938.1 + 59517 0.67 0.643521
Target:  5'- --cGGAUgccaGCCUCGucCGGGCCAGGc -3'
miRNA:   3'- guuCCUGgag-UGGAGCu-GCCUGGUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.