Results 1 - 20 of 44 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31896 | 5' | -56.2 | NC_006938.1 | + | 53997 | 1.09 | 0.001103 |
Target: 5'- uCAAGGACCUCACCUCGACGGACCAGGu -3' miRNA: 3'- -GUUCCUGGAGUGGAGCUGCCUGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 1675 | 0.79 | 0.140203 |
Target: 5'- aCAAGGACaagGCCUgGugGGACCGGGa -3' miRNA: 3'- -GUUCCUGgagUGGAgCugCCUGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 61133 | 0.78 | 0.173592 |
Target: 5'- gCGAGGACUUCACCUgGGaGGGCUGGGc -3' miRNA: 3'- -GUUCCUGGAGUGGAgCUgCCUGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 61362 | 0.76 | 0.224575 |
Target: 5'- gGAGGGCCUCGacauggaggucuuCCUCGACGGGgucagcCUAGGa -3' miRNA: 3'- gUUCCUGGAGU-------------GGAGCUGCCU------GGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 38734 | 0.75 | 0.24855 |
Target: 5'- -cGGGAuCCUCACCUgccagagCGGCGG-CCAGGu -3' miRNA: 3'- guUCCU-GGAGUGGA-------GCUGCCuGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 42270 | 0.75 | 0.249175 |
Target: 5'- gCAAGGACCUCGCagaUCGGacccuuccaGGACCGGu -3' miRNA: 3'- -GUUCCUGGAGUGg--AGCUg--------CCUGGUCc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 40595 | 0.75 | 0.249175 |
Target: 5'- uCGAGGACCUCAUgcgCUCcccggagcuGGCGGACCGGu -3' miRNA: 3'- -GUUCCUGGAGUG---GAG---------CUGCCUGGUCc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 17145 | 0.75 | 0.268555 |
Target: 5'- cCAAGGuCCUCGCCg-GACaGGACCuGGa -3' miRNA: 3'- -GUUCCuGGAGUGGagCUG-CCUGGuCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 19545 | 0.73 | 0.32614 |
Target: 5'- uCGGGGACUgcgugUGCCUCG-CGGACgGGGa -3' miRNA: 3'- -GUUCCUGGa----GUGGAGCuGCCUGgUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 8207 | 0.72 | 0.375033 |
Target: 5'- cCAGGGgcagACCUCuguCCUCG-CGGACgCGGGu -3' miRNA: 3'- -GUUCC----UGGAGu--GGAGCuGCCUG-GUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 36647 | 0.72 | 0.38365 |
Target: 5'- uCGAGG-CCUgccgcgcggaaCGCCgacgucucgCGACGGGCCAGGu -3' miRNA: 3'- -GUUCCuGGA-----------GUGGa--------GCUGCCUGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 51457 | 0.71 | 0.438018 |
Target: 5'- gGAGGGCUUCGacauCCUCGucGCGGccggaGCCGGGg -3' miRNA: 3'- gUUCCUGGAGU----GGAGC--UGCC-----UGGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 40463 | 0.71 | 0.4571 |
Target: 5'- uCGGGGACgaCAcuCCUcCGACGGAcgaCCAGGg -3' miRNA: 3'- -GUUCCUGgaGU--GGA-GCUGCCU---GGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 31200 | 0.7 | 0.486532 |
Target: 5'- -cGGGACCUgauggACCU-GACGGACCGGu -3' miRNA: 3'- guUCCUGGAg----UGGAgCUGCCUGGUCc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 31839 | 0.7 | 0.496542 |
Target: 5'- --uGGACCUC-CCagUGGCGGACCAc- -3' miRNA: 3'- guuCCUGGAGuGGa-GCUGCCUGGUcc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 2423 | 0.7 | 0.506643 |
Target: 5'- ---uGACCUCGuCCUCGACGGaguccuccccGCCgAGGa -3' miRNA: 3'- guucCUGGAGU-GGAGCUGCC----------UGG-UCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 55515 | 0.69 | 0.54786 |
Target: 5'- gAGGGGCCaCGCCUCGGC-GACCu-- -3' miRNA: 3'- gUUCCUGGaGUGGAGCUGcCUGGucc -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 35728 | 0.69 | 0.568869 |
Target: 5'- --cGcGCCaCACCUCGGCGGAcuucuCCAGGc -3' miRNA: 3'- guuCcUGGaGUGGAGCUGCCU-----GGUCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 46898 | 0.69 | 0.57945 |
Target: 5'- aGAGGAuCCggACgUCGGCGGGCUgcAGGa -3' miRNA: 3'- gUUCCU-GGagUGgAGCUGCCUGG--UCC- -5' |
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31896 | 5' | -56.2 | NC_006938.1 | + | 1407 | 0.69 | 0.57945 |
Target: 5'- gCGGGGAUCggagacaCGCCggUCGccACGGGCCGGGu -3' miRNA: 3'- -GUUCCUGGa------GUGG--AGC--UGCCUGGUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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