Results 61 - 80 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 24900 | 0.68 | 0.571782 |
Target: 5'- gUCGCGAUggaGUCAGCGGgAuCCUCaccuGCCa -3' miRNA: 3'- -AGCGCUG---CGGUCGUUgUuGGAGg---CGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 16282 | 0.68 | 0.571782 |
Target: 5'- gCGCuGgGUCGGCGACAGCC-CCugGCCc -3' miRNA: 3'- aGCGcUgCGGUCGUUGUUGGaGG--CGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 39843 | 0.68 | 0.568604 |
Target: 5'- uUCGCGgcaccacucagggcGCGCUcgAGCAucuCGGCCaugCCGCCc -3' miRNA: 3'- -AGCGC--------------UGCGG--UCGUu--GUUGGa--GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 38780 | 0.68 | 0.561206 |
Target: 5'- -aGCuGCGCCauGGCGGCGAUCgCCGCg -3' miRNA: 3'- agCGcUGCGG--UCGUUGUUGGaGGCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 17263 | 0.68 | 0.561206 |
Target: 5'- -gGCGGuCGCCAu---CAACgUCCGCCg -3' miRNA: 3'- agCGCU-GCGGUcguuGUUGgAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 17200 | 0.68 | 0.561206 |
Target: 5'- -gGUGG-GCCAGCuggucuGCcACCUCCGCg -3' miRNA: 3'- agCGCUgCGGUCGu-----UGuUGGAGGCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 26403 | 0.68 | 0.558043 |
Target: 5'- -gGCGGCGCUAGUGgcgcgacucguuccACAAUCUCUGgCa -3' miRNA: 3'- agCGCUGCGGUCGU--------------UGUUGGAGGCgG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 18973 | 0.68 | 0.550684 |
Target: 5'- aUGUGAgGcCCAGCGACAGUC-CCGUCa -3' miRNA: 3'- aGCGCUgC-GGUCGUUGUUGGaGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 7177 | 0.68 | 0.550684 |
Target: 5'- gUUGCgGACGCCAcccgucgcguuGUAGCAGCUUCCcuCCa -3' miRNA: 3'- -AGCG-CUGCGGU-----------CGUUGUUGGAGGc-GG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 7991 | 0.68 | 0.550684 |
Target: 5'- -gGCGAC-CCGGCc-CAGCUcCCGCCc -3' miRNA: 3'- agCGCUGcGGUCGuuGUUGGaGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 18448 | 0.68 | 0.550684 |
Target: 5'- aCGUGAacaUG-CAGCAGCAGCCgucCCGCg -3' miRNA: 3'- aGCGCU---GCgGUCGUUGUUGGa--GGCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 9847 | 0.68 | 0.550684 |
Target: 5'- ---aGACGCUGGCGuGCAacuccuaucagGCCUCCGUCg -3' miRNA: 3'- agcgCUGCGGUCGU-UGU-----------UGGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 39956 | 0.68 | 0.540223 |
Target: 5'- -aGCGAa--CGGCAACuuccucACCUCCGUCg -3' miRNA: 3'- agCGCUgcgGUCGUUGu-----UGGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 28049 | 0.68 | 0.52983 |
Target: 5'- --uCGAUGCCaagGGCGACAGCaagCCGCUg -3' miRNA: 3'- agcGCUGCGG---UCGUUGUUGga-GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 49308 | 0.68 | 0.52983 |
Target: 5'- cUUGUGaguGCGCCAGacggAGCAcCCUCCgGCCg -3' miRNA: 3'- -AGCGC---UGCGGUCg---UUGUuGGAGG-CGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 12537 | 0.68 | 0.52983 |
Target: 5'- aCGCGGCGgaggccCCGGUGGCAGCgUCgaacgCGCCg -3' miRNA: 3'- aGCGCUGC------GGUCGUUGUUGgAG-----GCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 11610 | 0.68 | 0.52983 |
Target: 5'- uUCGCGGCagauCgGGCGGCAccGCCgagcccaCCGCCg -3' miRNA: 3'- -AGCGCUGc---GgUCGUUGU--UGGa------GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 1323 | 0.68 | 0.52983 |
Target: 5'- gCGUGGCaucGCCuuGGCAGCAagGCCgccgUCGCCa -3' miRNA: 3'- aGCGCUG---CGG--UCGUUGU--UGGa---GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 23683 | 0.68 | 0.52983 |
Target: 5'- gCGCGACGUCGGCcagGGCGGCa-UgGCCg -3' miRNA: 3'- aGCGCUGCGGUCG---UUGUUGgaGgCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 16163 | 0.69 | 0.52054 |
Target: 5'- aCGCGGCGCuacgacgucgcaCAGCAcuccuggaacaugcuCAACCUCgCGCUg -3' miRNA: 3'- aGCGCUGCG------------GUCGUu--------------GUUGGAG-GCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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