miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 27569 0.67 0.61877
Target:  5'- -gGCGAUGCCguugauggcggugcgAGUGAUGGCCUCgGCg -3'
miRNA:   3'- agCGCUGCGG---------------UCGUUGUUGGAGgCGg -5'
31897 3' -56.9 NC_006938.1 + 61471 0.67 0.614478
Target:  5'- -aGCGGCaaCGGCAACggUCUCgGCg -3'
miRNA:   3'- agCGCUGcgGUCGUUGuuGGAGgCGg -5'
31897 3' -56.9 NC_006938.1 + 10039 0.67 0.614478
Target:  5'- cUCGCuGACGgCGGaCAACGuguCCUCUGgCa -3'
miRNA:   3'- -AGCG-CUGCgGUC-GUUGUu--GGAGGCgG- -5'
31897 3' -56.9 NC_006938.1 + 26032 0.67 0.614478
Target:  5'- -gGCGGCcucguccagcuuGCCAGCGgcgGCGGCCUCgaGCUc -3'
miRNA:   3'- agCGCUG------------CGGUCGU---UGUUGGAGg-CGG- -5'
31897 3' -56.9 NC_006938.1 + 40069 0.67 0.614478
Target:  5'- cUGgGcCGCCuucuGCAGCu-CCUCUGCCc -3'
miRNA:   3'- aGCgCuGCGGu---CGUUGuuGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 19498 0.67 0.614478
Target:  5'- -aGUGACuCacacaGGCGACGACCU-CGCCa -3'
miRNA:   3'- agCGCUGcGg----UCGUUGUUGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 16792 0.67 0.614478
Target:  5'- cUCGauGCGCCAGCGGgAGCCgUCUGaCUc -3'
miRNA:   3'- -AGCgcUGCGGUCGUUgUUGG-AGGC-GG- -5'
31897 3' -56.9 NC_006938.1 + 38034 0.67 0.603761
Target:  5'- aCGCGAgcaCGCCgAGCgGAUGGCCaaggCCGCUg -3'
miRNA:   3'- aGCGCU---GCGG-UCG-UUGUUGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 4766 0.67 0.603761
Target:  5'- aUCGUGACGCgauuGGUGAau-CCUCgGCCa -3'
miRNA:   3'- -AGCGCUGCGg---UCGUUguuGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 47434 0.67 0.603761
Target:  5'- -gGUGugG-CAGCGGuCGACCcagCCGCCc -3'
miRNA:   3'- agCGCugCgGUCGUU-GUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 30426 0.67 0.593067
Target:  5'- cUCGCGuAUGCCcuuGGCGAUGuCgaCCGCCa -3'
miRNA:   3'- -AGCGC-UGCGG---UCGUUGUuGgaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 59968 0.67 0.593067
Target:  5'- aUCGCuGuguuCG-CGGCucCAACCUCCGUCa -3'
miRNA:   3'- -AGCG-Cu---GCgGUCGuuGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 8884 0.67 0.593067
Target:  5'- aUGCGcuucAUGCCAGCGggccGCGuCCaggCCGCCa -3'
miRNA:   3'- aGCGC----UGCGGUCGU----UGUuGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 33374 0.67 0.593067
Target:  5'- gCGCGACGCCGGUcccaacagggacGACAAgggcaccauCCUUgGCa -3'
miRNA:   3'- aGCGCUGCGGUCG------------UUGUU---------GGAGgCGg -5'
31897 3' -56.9 NC_006938.1 + 42809 0.67 0.592
Target:  5'- gCGCGAaguucaccuugucCGCCuccaucAGCGACAccuGCCUCCGgUCg -3'
miRNA:   3'- aGCGCU-------------GCGG------UCGUUGU---UGGAGGC-GG- -5'
31897 3' -56.9 NC_006938.1 + 45870 0.67 0.592
Target:  5'- gUCGCGAuaCGCCuugacaAGCGGCAugucgauGCCcUCGCCc -3'
miRNA:   3'- -AGCGCU--GCGG------UCGUUGU-------UGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 2207 0.68 0.582405
Target:  5'- -gGCGAgGgCGGCAucauagACGugCUCCgGCCa -3'
miRNA:   3'- agCGCUgCgGUCGU------UGUugGAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 4203 0.68 0.582405
Target:  5'- cUGCuGAcCGCCgAGCuccccaucgucAACGugCUCCGCCu -3'
miRNA:   3'- aGCG-CU-GCGG-UCG-----------UUGUugGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 48536 0.68 0.582405
Target:  5'- aCGCuGaACGCCAaCAACAacGCCU-CGCCg -3'
miRNA:   3'- aGCG-C-UGCGGUcGUUGU--UGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 33563 0.68 0.571782
Target:  5'- cCGCGu--CCGGUucgucGGCAACCgugCCGCCa -3'
miRNA:   3'- aGCGCugcGGUCG-----UUGUUGGa--GGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.