miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 51496 0.66 0.67877
Target:  5'- aCGCGGaucacUGCCAGCuuguucagGGCgGACUUCCgGCCg -3'
miRNA:   3'- aGCGCU-----GCGGUCG--------UUG-UUGGAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 58034 0.66 0.675574
Target:  5'- cCGCGcccuCGCCGGCAcagacuggggcgugACGAUCaaCGCCc -3'
miRNA:   3'- aGCGCu---GCGGUCGU--------------UGUUGGagGCGG- -5'
31897 3' -56.9 NC_006938.1 + 55408 0.66 0.668103
Target:  5'- gCGCGcuCGCCgcaGGCGGCcugGGCUUCuCGCCc -3'
miRNA:   3'- aGCGCu-GCGG---UCGUUG---UUGGAG-GCGG- -5'
31897 3' -56.9 NC_006938.1 + 24500 0.66 0.668103
Target:  5'- cUCGUacAUGCCAGCGAC-ACCagcggugCCGUCg -3'
miRNA:   3'- -AGCGc-UGCGGUCGUUGuUGGa------GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 29548 0.66 0.668103
Target:  5'- cCGuCGACGCgGguguccGCGAgGGCCUgUGCCa -3'
miRNA:   3'- aGC-GCUGCGgU------CGUUgUUGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 48945 0.66 0.657404
Target:  5'- uUCcCGAcCGUCGGCAGcCAGCCaucuggcaggUCUGCCa -3'
miRNA:   3'- -AGcGCU-GCGGUCGUU-GUUGG----------AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 11244 0.66 0.657404
Target:  5'- -gGCGGUGCCucAGCugcugguCGACCUCCGUg -3'
miRNA:   3'- agCGCUGCGG--UCGuu-----GUUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 55961 0.66 0.657404
Target:  5'- aCGCGGCGaacuucacUCGGCccgaGACGcCCUCgGCCa -3'
miRNA:   3'- aGCGCUGC--------GGUCG----UUGUuGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 48211 0.66 0.657404
Target:  5'- cCGCcaGCGCCAGCcgUAGgCUCC-CCa -3'
miRNA:   3'- aGCGc-UGCGGUCGuuGUUgGAGGcGG- -5'
31897 3' -56.9 NC_006938.1 + 28820 0.66 0.657404
Target:  5'- cCGCGACGCgcaCGGUcAguGCCU-CGCCu -3'
miRNA:   3'- aGCGCUGCG---GUCGuUguUGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 17551 0.66 0.657404
Target:  5'- gUGCGACaugagaaCGGCGACAACCUggaCGCg -3'
miRNA:   3'- aGCGCUGcg-----GUCGUUGUUGGAg--GCGg -5'
31897 3' -56.9 NC_006938.1 + 42756 0.66 0.657404
Target:  5'- -gGCGAUGCCAcCAccgaggGCAGCgUCCGUUu -3'
miRNA:   3'- agCGCUGCGGUcGU------UGUUGgAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 2061 0.66 0.657404
Target:  5'- aCGCGAgggGCCGGUucuACGACUg-CGCCg -3'
miRNA:   3'- aGCGCUg--CGGUCGu--UGUUGGagGCGG- -5'
31897 3' -56.9 NC_006938.1 + 45784 0.66 0.646682
Target:  5'- aCGauuCGCCGGCAACAagGCCgaggCCcguGCCa -3'
miRNA:   3'- aGCgcuGCGGUCGUUGU--UGGa---GG---CGG- -5'
31897 3' -56.9 NC_006938.1 + 51045 0.66 0.646682
Target:  5'- nCGCGuuUGCCAGCGcCAuccugACCaUCGCCa -3'
miRNA:   3'- aGCGCu-GCGGUCGUuGU-----UGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 5646 0.66 0.646682
Target:  5'- aCGgGACGCCAGgc-CAGCCguaUCGUCg -3'
miRNA:   3'- aGCgCUGCGGUCguuGUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 802 0.66 0.646682
Target:  5'- -aGUGuuGCCAGCcgguguGGCcGCCUCCGUg -3'
miRNA:   3'- agCGCugCGGUCG------UUGuUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 24300 0.67 0.635948
Target:  5'- gUCGCGGCGUUGGacgGACcACCgUuuGCCg -3'
miRNA:   3'- -AGCGCUGCGGUCg--UUGuUGG-AggCGG- -5'
31897 3' -56.9 NC_006938.1 + 51111 0.67 0.635948
Target:  5'- aUCGUGGCGaUCAGCAcGCGGCggUCGUCa -3'
miRNA:   3'- -AGCGCUGC-GGUCGU-UGUUGgaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 274 0.67 0.62521
Target:  5'- cCGCG-UGCCAcCAGCuGCUUCUGUCg -3'
miRNA:   3'- aGCGCuGCGGUcGUUGuUGGAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.