Results 21 - 40 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 16907 | 0.66 | 0.67877 |
Target: 5'- aCGCGGagaaGCuggcagaguuCAGCAAgAACCcacCCGCCg -3' miRNA: 3'- aGCGCUg---CG----------GUCGUUgUUGGa--GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 2704 | 0.66 | 0.67877 |
Target: 5'- cCGCcugGGCGCUcguguaaacaagGGUcACGACCacUCCGCCg -3' miRNA: 3'- aGCG---CUGCGG------------UCGuUGUUGG--AGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 802 | 0.66 | 0.646682 |
Target: 5'- -aGUGuuGCCAGCcgguguGGCcGCCUCCGUg -3' miRNA: 3'- agCGCugCGGUCG------UUGuUGGAGGCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 5646 | 0.66 | 0.646682 |
Target: 5'- aCGgGACGCCAGgc-CAGCCguaUCGUCg -3' miRNA: 3'- aGCgCUGCGGUCguuGUUGGa--GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 48945 | 0.66 | 0.657404 |
Target: 5'- uUCcCGAcCGUCGGCAGcCAGCCaucuggcaggUCUGCCa -3' miRNA: 3'- -AGcGCU-GCGGUCGUU-GUUGG----------AGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 45784 | 0.66 | 0.646682 |
Target: 5'- aCGauuCGCCGGCAACAagGCCgaggCCcguGCCa -3' miRNA: 3'- aGCgcuGCGGUCGUUGU--UGGa---GG---CGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 51045 | 0.66 | 0.646682 |
Target: 5'- nCGCGuuUGCCAGCGcCAuccugACCaUCGCCa -3' miRNA: 3'- aGCGCu-GCGGUCGUuGU-----UGGaGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 11244 | 0.66 | 0.657404 |
Target: 5'- -gGCGGUGCCucAGCugcugguCGACCUCCGUg -3' miRNA: 3'- agCGCUGCGG--UCGuu-----GUUGGAGGCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 42756 | 0.66 | 0.657404 |
Target: 5'- -gGCGAUGCCAcCAccgaggGCAGCgUCCGUUu -3' miRNA: 3'- agCGCUGCGGUcGU------UGUUGgAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 2061 | 0.66 | 0.657404 |
Target: 5'- aCGCGAgggGCCGGUucuACGACUg-CGCCg -3' miRNA: 3'- aGCGCUg--CGGUCGu--UGUUGGagGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 41004 | 0.66 | 0.67877 |
Target: 5'- -aGCGACGCCAGgAAC--CCgaaCGCg -3' miRNA: 3'- agCGCUGCGGUCgUUGuuGGag-GCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 6902 | 0.66 | 0.67877 |
Target: 5'- -aGCGGCcCCGGCcuu-GCCUCCccaGCCg -3' miRNA: 3'- agCGCUGcGGUCGuuguUGGAGG---CGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 55408 | 0.66 | 0.668103 |
Target: 5'- gCGCGcuCGCCgcaGGCGGCcugGGCUUCuCGCCc -3' miRNA: 3'- aGCGCu-GCGG---UCGUUG---UUGGAG-GCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 17551 | 0.66 | 0.657404 |
Target: 5'- gUGCGACaugagaaCGGCGACAACCUggaCGCg -3' miRNA: 3'- aGCGCUGcg-----GUCGUUGUUGGAg--GCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 58034 | 0.66 | 0.675574 |
Target: 5'- cCGCGcccuCGCCGGCAcagacuggggcgugACGAUCaaCGCCc -3' miRNA: 3'- aGCGCu---GCGGUCGU--------------UGUUGGagGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 29548 | 0.66 | 0.668103 |
Target: 5'- cCGuCGACGCgGguguccGCGAgGGCCUgUGCCa -3' miRNA: 3'- aGC-GCUGCGgU------CGUUgUUGGAgGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 24235 | 0.66 | 0.699968 |
Target: 5'- aUCGUGAaGCuCGGCAcCcgGACCgaCCGCCa -3' miRNA: 3'- -AGCGCUgCG-GUCGUuG--UUGGa-GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 61471 | 0.67 | 0.614478 |
Target: 5'- -aGCGGCaaCGGCAACggUCUCgGCg -3' miRNA: 3'- agCGCUGcgGUCGUUGuuGGAGgCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 38034 | 0.67 | 0.603761 |
Target: 5'- aCGCGAgcaCGCCgAGCgGAUGGCCaaggCCGCUg -3' miRNA: 3'- aGCGCU---GCGG-UCG-UUGUUGGa---GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 8884 | 0.67 | 0.593067 |
Target: 5'- aUGCGcuucAUGCCAGCGggccGCGuCCaggCCGCCa -3' miRNA: 3'- aGCGC----UGCGGUCGU----UGUuGGa--GGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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