Results 21 - 40 of 133 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31897 | 3' | -56.9 | NC_006938.1 | + | 9010 | 0.69 | 0.489058 |
Target: 5'- -aGCG-CGCCaAGCAG--GCCgCCGCCa -3' miRNA: 3'- agCGCuGCGG-UCGUUguUGGaGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 9164 | 0.75 | 0.220349 |
Target: 5'- gUGCGuCGCCAGCucUGGCCaCCGCCg -3' miRNA: 3'- aGCGCuGCGGUCGuuGUUGGaGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 9329 | 0.69 | 0.49912 |
Target: 5'- aCGaCGAUGUCAGUucCAACCUgCGUCc -3' miRNA: 3'- aGC-GCUGCGGUCGuuGUUGGAgGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 9847 | 0.68 | 0.550684 |
Target: 5'- ---aGACGCUGGCGuGCAacuccuaucagGCCUCCGUCg -3' miRNA: 3'- agcgCUGCGGUCGU-UGU-----------UGGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 10039 | 0.67 | 0.614478 |
Target: 5'- cUCGCuGACGgCGGaCAACGuguCCUCUGgCa -3' miRNA: 3'- -AGCG-CUGCgGUC-GUUGUu--GGAGGCgG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 11244 | 0.66 | 0.657404 |
Target: 5'- -gGCGGUGCCucAGCugcugguCGACCUCCGUg -3' miRNA: 3'- agCGCUGCGG--UCGuu-----GUUGGAGGCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 11610 | 0.68 | 0.52983 |
Target: 5'- uUCGCGGCagauCgGGCGGCAccGCCgagcccaCCGCCg -3' miRNA: 3'- -AGCGCUGc---GgUCGUUGU--UGGa------GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 12431 | 0.72 | 0.359973 |
Target: 5'- uUCGCGA-GCCAcuucGUGACGACCgCCGCg -3' miRNA: 3'- -AGCGCUgCGGU----CGUUGUUGGaGGCGg -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 12537 | 0.68 | 0.52983 |
Target: 5'- aCGCGGCGgaggccCCGGUGGCAGCgUCgaacgCGCCg -3' miRNA: 3'- aGCGCUGC------GGUCGUUGUUGgAG-----GCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 12667 | 0.72 | 0.359973 |
Target: 5'- cUCGCGgaagGCGUUgAGC-ACGACCUCgGCCg -3' miRNA: 3'- -AGCGC----UGCGG-UCGuUGUUGGAGgCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 13012 | 0.69 | 0.518484 |
Target: 5'- gUGCGAuuagagaUGCCaaagaGGCGAUcaguGACCUCUGCCa -3' miRNA: 3'- aGCGCU-------GCGG-----UCGUUG----UUGGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 13183 | 0.73 | 0.297643 |
Target: 5'- aUGCGACG--AGCggUGGCCUCCGCUc -3' miRNA: 3'- aGCGCUGCggUCGuuGUUGGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 14843 | 0.69 | 0.479092 |
Target: 5'- cUUGCGA-GCCAGCGu--GCCaUCGCCa -3' miRNA: 3'- -AGCGCUgCGGUCGUuguUGGaGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 14893 | 0.73 | 0.276526 |
Target: 5'- gUGUGACGUCAGCGuuguuccggACGGCCUuggUCGCCu -3' miRNA: 3'- aGCGCUGCGGUCGU---------UGUUGGA---GGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 15095 | 0.75 | 0.220349 |
Target: 5'- uUUGCcACGCCAGacuGCGugggccggACCUCCGCCa -3' miRNA: 3'- -AGCGcUGCGGUCgu-UGU--------UGGAGGCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 15338 | 0.71 | 0.41237 |
Target: 5'- aCGaUGGCGCCAcGCAGC-ACCUCUGaCUg -3' miRNA: 3'- aGC-GCUGCGGU-CGUUGuUGGAGGC-GG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 15971 | 0.71 | 0.411459 |
Target: 5'- cCGUGACGCCGGUgauguccaguGACGuggucguACUUCcCGCCg -3' miRNA: 3'- aGCGCUGCGGUCG----------UUGU-------UGGAG-GCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 16163 | 0.69 | 0.52054 |
Target: 5'- aCGCGGCGCuacgacgucgcaCAGCAcuccuggaacaugcuCAACCUCgCGCUg -3' miRNA: 3'- aGCGCUGCG------------GUCGUu--------------GUUGGAG-GCGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 16282 | 0.68 | 0.571782 |
Target: 5'- gCGCuGgGUCGGCGACAGCC-CCugGCCc -3' miRNA: 3'- aGCGcUgCGGUCGUUGUUGGaGG--CGG- -5' |
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31897 | 3' | -56.9 | NC_006938.1 | + | 16792 | 0.67 | 0.614478 |
Target: 5'- cUCGauGCGCCAGCGGgAGCCgUCUGaCUc -3' miRNA: 3'- -AGCgcUGCGGUCGUUgUUGG-AGGC-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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