miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 274 0.67 0.62521
Target:  5'- cCGCG-UGCCAcCAGCuGCUUCUGUCg -3'
miRNA:   3'- aGCGCuGCGGUcGUUGuUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 562 0.69 0.518484
Target:  5'- aCGCGAUcgacaugugggagGCCGGUgccGAgAGgCUCCGCCu -3'
miRNA:   3'- aGCGCUG-------------CGGUCG---UUgUUgGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 802 0.66 0.646682
Target:  5'- -aGUGuuGCCAGCcgguguGGCcGCCUCCGUg -3'
miRNA:   3'- agCGCugCGGUCG------UUGuUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 1323 0.68 0.52983
Target:  5'- gCGUGGCaucGCCuuGGCAGCAagGCCgccgUCGCCa -3'
miRNA:   3'- aGCGCUG---CGG--UCGUUGU--UGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 1720 0.69 0.519511
Target:  5'- gCGaCGACGCCAugGACAGCUcCgGCCg -3'
miRNA:   3'- aGC-GCUGCGGUcgUUGUUGGaGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 2061 0.66 0.657404
Target:  5'- aCGCGAgggGCCGGUucuACGACUg-CGCCg -3'
miRNA:   3'- aGCGCUg--CGGUCGu--UGUUGGagGCGG- -5'
31897 3' -56.9 NC_006938.1 + 2207 0.68 0.582405
Target:  5'- -gGCGAgGgCGGCAucauagACGugCUCCgGCCa -3'
miRNA:   3'- agCGCUgCgGUCGU------UGUugGAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 2704 0.66 0.67877
Target:  5'- cCGCcugGGCGCUcguguaaacaagGGUcACGACCacUCCGCCg -3'
miRNA:   3'- aGCG---CUGCGG------------UCGuUGUUGG--AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 4203 0.68 0.582405
Target:  5'- cUGCuGAcCGCCgAGCuccccaucgucAACGugCUCCGCCu -3'
miRNA:   3'- aGCG-CU-GCGG-UCG-----------UUGUugGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 4766 0.67 0.603761
Target:  5'- aUCGUGACGCgauuGGUGAau-CCUCgGCCa -3'
miRNA:   3'- -AGCGCUGCGg---UCGUUguuGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 5184 0.66 0.67877
Target:  5'- cCGCuGgGCCAGCGGCAGCaggaaCGCg -3'
miRNA:   3'- aGCGcUgCGGUCGUUGUUGgag--GCGg -5'
31897 3' -56.9 NC_006938.1 + 5510 0.66 0.699968
Target:  5'- aCGCGccacccgcCGCUGGCAGCAauGCCaaggCCGUCc -3'
miRNA:   3'- aGCGCu-------GCGGUCGUUGU--UGGa---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 5646 0.66 0.646682
Target:  5'- aCGgGACGCCAGgc-CAGCCguaUCGUCg -3'
miRNA:   3'- aGCgCUGCGGUCguuGUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 6902 0.66 0.67877
Target:  5'- -aGCGGCcCCGGCcuu-GCCUCCccaGCCg -3'
miRNA:   3'- agCGCUGcGGUCGuuguUGGAGG---CGG- -5'
31897 3' -56.9 NC_006938.1 + 7177 0.68 0.550684
Target:  5'- gUUGCgGACGCCAcccgucgcguuGUAGCAGCUUCCcuCCa -3'
miRNA:   3'- -AGCG-CUGCGGU-----------CGUUGUUGGAGGc-GG- -5'
31897 3' -56.9 NC_006938.1 + 7991 0.68 0.550684
Target:  5'- -gGCGAC-CCGGCc-CAGCUcCCGCCc -3'
miRNA:   3'- agCGCUGcGGUCGuuGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 8231 0.66 0.67877
Target:  5'- aCGCGugGaCCGGgcgacCGACGACUgacUCgGCCu -3'
miRNA:   3'- aGCGCugC-GGUC-----GUUGUUGG---AGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 8294 0.66 0.689395
Target:  5'- cCG-GugGUCGGCGAcCGGCUcgUCUGCCu -3'
miRNA:   3'- aGCgCugCGGUCGUU-GUUGG--AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 8884 0.67 0.593067
Target:  5'- aUGCGcuucAUGCCAGCGggccGCGuCCaggCCGCCa -3'
miRNA:   3'- aGCGC----UGCGGUCGU----UGUuGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 8976 0.66 0.699968
Target:  5'- aCGCu-CGCaCGGUGACGGCCUUguugaaCGCCu -3'
miRNA:   3'- aGCGcuGCG-GUCGUUGUUGGAG------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.