miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 62762 0.72 0.334781
Target:  5'- -gGCGGCcacaccgGCUGGCAACAcuggagACCUCCGCa -3'
miRNA:   3'- agCGCUG-------CGGUCGUUGU------UGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 62552 0.71 0.41237
Target:  5'- gCGCGACGCguCGGCGGCcgagGAgUUCCGUCu -3'
miRNA:   3'- aGCGCUGCG--GUCGUUG----UUgGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 62150 0.66 0.699968
Target:  5'- cCGUGGCGaCCGGCGugucucCGAUCcCCGCg -3'
miRNA:   3'- aGCGCUGC-GGUCGUu-----GUUGGaGGCGg -5'
31897 3' -56.9 NC_006938.1 + 61779 0.7 0.421551
Target:  5'- gCGCGGCgGUCGGCAGgAuguucAUCUCCGCg -3'
miRNA:   3'- aGCGCUG-CGGUCGUUgU-----UGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 61471 0.67 0.614478
Target:  5'- -aGCGGCaaCGGCAACggUCUCgGCg -3'
miRNA:   3'- agCGCUGcgGUCGUUGuuGGAGgCGg -5'
31897 3' -56.9 NC_006938.1 + 61198 0.7 0.459467
Target:  5'- -gGCcAUGUCGGCGACGGCCUUgGUCu -3'
miRNA:   3'- agCGcUGCGGUCGUUGUUGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 60689 0.69 0.49912
Target:  5'- -gGCGGCccGCCAGUcGCGACCUCggaGCg -3'
miRNA:   3'- agCGCUG--CGGUCGuUGUUGGAGg--CGg -5'
31897 3' -56.9 NC_006938.1 + 60336 0.7 0.459467
Target:  5'- gCGCGGCgGCCcuCAGC-GCCUCUGCa -3'
miRNA:   3'- aGCGCUG-CGGucGUUGuUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 60065 0.71 0.376054
Target:  5'- --aCGugGCCGGggcCAACAACCucaccguUCCGCCa -3'
miRNA:   3'- agcGCugCGGUC---GUUGUUGG-------AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 59968 0.67 0.593067
Target:  5'- aUCGCuGuguuCG-CGGCucCAACCUCCGUCa -3'
miRNA:   3'- -AGCG-Cu---GCgGUCGuuGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 58034 0.66 0.675574
Target:  5'- cCGCGcccuCGCCGGCAcagacuggggcgugACGAUCaaCGCCc -3'
miRNA:   3'- aGCGCu---GCGGUCGU--------------UGUUGGagGCGG- -5'
31897 3' -56.9 NC_006938.1 + 57440 0.69 0.519511
Target:  5'- cCGUGGCuCCGGCAuagucGCcccauGCCUCgGCCa -3'
miRNA:   3'- aGCGCUGcGGUCGU-----UGu----UGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 55961 0.66 0.657404
Target:  5'- aCGCGGCGaacuucacUCGGCccgaGACGcCCUCgGCCa -3'
miRNA:   3'- aGCGCUGC--------GGUCG----UUGUuGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 55408 0.66 0.668103
Target:  5'- gCGCGcuCGCCgcaGGCGGCcugGGCUUCuCGCCc -3'
miRNA:   3'- aGCGCu-GCGG---UCGUUG---UUGGAG-GCGG- -5'
31897 3' -56.9 NC_006938.1 + 54192 1.12 0.000574
Target:  5'- cUCGCGACGCCAGCAACAACCUCCGCCu -3'
miRNA:   3'- -AGCGCUGCGGUCGUUGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 53704 0.69 0.479092
Target:  5'- cCGCGuACGCCcuGGaGACgAACCUCCGUg -3'
miRNA:   3'- aGCGC-UGCGG--UCgUUG-UUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 51973 0.69 0.519511
Target:  5'- cUCcCGACGgaAGCcaaaGGCCUCCGCCa -3'
miRNA:   3'- -AGcGCUGCggUCGuug-UUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51513 0.71 0.391731
Target:  5'- cCGCGugGaacaaccugcCCGGCGcguucaucgagaucGCAACCgCCGCCa -3'
miRNA:   3'- aGCGCugC----------GGUCGU--------------UGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51496 0.66 0.67877
Target:  5'- aCGCGGaucacUGCCAGCuuguucagGGCgGACUUCCgGCCg -3'
miRNA:   3'- aGCGCU-----GCGGUCG--------UUG-UUGGAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 51405 0.73 0.283429
Target:  5'- gCGUGugGCCGGCcAUcGCCgCCGCUg -3'
miRNA:   3'- aGCGCugCGGUCGuUGuUGGaGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.