miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 9010 0.69 0.489058
Target:  5'- -aGCG-CGCCaAGCAG--GCCgCCGCCa -3'
miRNA:   3'- agCGCuGCGG-UCGUUguUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 62552 0.71 0.41237
Target:  5'- gCGCGACGCguCGGCGGCcgagGAgUUCCGUCu -3'
miRNA:   3'- aGCGCUGCG--GUCGUUG----UUgGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 33736 0.7 0.420628
Target:  5'- aC-CGACGuCCGGCAuGCAGCaggacggcaugaaCUCCGCCa -3'
miRNA:   3'- aGcGCUGC-GGUCGU-UGUUG-------------GAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 28590 0.7 0.440277
Target:  5'- uUCGCGcucuaucaGCaGGCGAuCGACCUCCGUCu -3'
miRNA:   3'- -AGCGCug------CGgUCGUU-GUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 21222 0.7 0.458497
Target:  5'- aUCGUGGCGgCGGacugggugcacguCGACGucgaucCCUCCGCCg -3'
miRNA:   3'- -AGCGCUGCgGUC-------------GUUGUu-----GGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 60336 0.7 0.459467
Target:  5'- gCGCGGCgGCCcuCAGC-GCCUCUGCa -3'
miRNA:   3'- aGCGCUG-CGGucGUUGuUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 51015 0.69 0.469227
Target:  5'- gCGCguucGACGCU-GCcACcggGGCCUCCGCCg -3'
miRNA:   3'- aGCG----CUGCGGuCGuUG---UUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 45438 0.69 0.469227
Target:  5'- cUGCGAUGCCAuaGACG-CCUUCGUg -3'
miRNA:   3'- aGCGCUGCGGUcgUUGUuGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 53704 0.69 0.479092
Target:  5'- cCGCGuACGCCcuGGaGACgAACCUCCGUg -3'
miRNA:   3'- aGCGC-UGCGG--UCgUUG-UUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 51513 0.71 0.391731
Target:  5'- cCGCGugGaacaaccugcCCGGCGcguucaucgagaucGCAACCgCCGCCa -3'
miRNA:   3'- aGCGCugC----------GGUCGU--------------UGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 60065 0.71 0.376054
Target:  5'- --aCGugGCCGGggcCAACAACCucaccguUCCGCCa -3'
miRNA:   3'- agcGCugCGGUC---GUUGUUGG-------AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 50761 0.71 0.368376
Target:  5'- cCGgGGCacuGCgCGGCGACGAgCUCCGCUc -3'
miRNA:   3'- aGCgCUG---CG-GUCGUUGUUgGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 42435 0.76 0.18854
Target:  5'- -aGCGACGCCuGCcACucCCUCgGCCg -3'
miRNA:   3'- agCGCUGCGGuCGuUGuuGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 29888 0.76 0.198668
Target:  5'- -aGCGGaGCCAGaucCAGCAcCCUCCGCCu -3'
miRNA:   3'- agCGCUgCGGUC---GUUGUuGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 9164 0.75 0.220349
Target:  5'- gUGCGuCGCCAGCucUGGCCaCCGCCg -3'
miRNA:   3'- aGCGCuGCGGUCGuuGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51405 0.73 0.283429
Target:  5'- gCGUGugGCCGGCcAUcGCCgCCGCUg -3'
miRNA:   3'- aGCGCugCGGUCGuUGuUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 50842 0.73 0.297643
Target:  5'- gUGUGACGCgGG--GCGAgCUCCGCCa -3'
miRNA:   3'- aGCGCUGCGgUCguUGUUgGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 62762 0.72 0.334781
Target:  5'- -gGCGGCcacaccgGCUGGCAACAcuggagACCUCCGCa -3'
miRNA:   3'- agCGCUG-------CGGUCGUUGU------UGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 12431 0.72 0.359973
Target:  5'- uUCGCGA-GCCAcuucGUGACGACCgCCGCg -3'
miRNA:   3'- -AGCGCUgCGGU----CGUUGUUGGaGGCGg -5'
31897 3' -56.9 NC_006938.1 + 35815 0.71 0.368376
Target:  5'- gCGCcagugGGCGuCCAacauucGCAACucuGACCUCCGCCg -3'
miRNA:   3'- aGCG-----CUGC-GGU------CGUUG---UUGGAGGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.