miRNA display CGI


Results 1 - 20 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 62150 0.66 0.699968
Target:  5'- cCGUGGCGaCCGGCGugucucCGAUCcCCGCg -3'
miRNA:   3'- aGCGCUGC-GGUCGUu-----GUUGGaGGCGg -5'
31897 3' -56.9 NC_006938.1 + 27569 0.67 0.61877
Target:  5'- -gGCGAUGCCguugauggcggugcgAGUGAUGGCCUCgGCg -3'
miRNA:   3'- agCGCUGCGG---------------UCGUUGUUGGAGgCGg -5'
31897 3' -56.9 NC_006938.1 + 26032 0.67 0.614478
Target:  5'- -gGCGGCcucguccagcuuGCCAGCGgcgGCGGCCUCgaGCUc -3'
miRNA:   3'- agCGCUG------------CGGUCGU---UGUUGGAGg-CGG- -5'
31897 3' -56.9 NC_006938.1 + 33447 0.83 0.064735
Target:  5'- gCGCGaACGCCcaGGCAGaacuccCAGCCUCCGCCg -3'
miRNA:   3'- aGCGC-UGCGG--UCGUU------GUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51496 0.66 0.67877
Target:  5'- aCGCGGaucacUGCCAGCuuguucagGGCgGACUUCCgGCCg -3'
miRNA:   3'- aGCGCU-----GCGGUCG--------UUG-UUGGAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 8231 0.66 0.67877
Target:  5'- aCGCGugGaCCGGgcgacCGACGACUgacUCgGCCu -3'
miRNA:   3'- aGCGCugC-GGUC-----GUUGUUGG---AGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 24500 0.66 0.668103
Target:  5'- cUCGUacAUGCCAGCGAC-ACCagcggugCCGUCg -3'
miRNA:   3'- -AGCGc-UGCGGUCGUUGuUGGa------GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 55961 0.66 0.657404
Target:  5'- aCGCGGCGaacuucacUCGGCccgaGACGcCCUCgGCCa -3'
miRNA:   3'- aGCGCUGC--------GGUCG----UUGUuGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 48945 0.66 0.657404
Target:  5'- uUCcCGAcCGUCGGCAGcCAGCCaucuggcaggUCUGCCa -3'
miRNA:   3'- -AGcGCU-GCGGUCGUU-GUUGG----------AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 274 0.67 0.62521
Target:  5'- cCGCG-UGCCAcCAGCuGCUUCUGUCg -3'
miRNA:   3'- aGCGCuGCGGUcGUUGuUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 802 0.66 0.646682
Target:  5'- -aGUGuuGCCAGCcgguguGGCcGCCUCCGUg -3'
miRNA:   3'- agCGCugCGGUCG------UUGuUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 28820 0.66 0.657404
Target:  5'- cCGCGACGCgcaCGGUcAguGCCU-CGCCu -3'
miRNA:   3'- aGCGCUGCG---GUCGuUguUGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 8976 0.66 0.699968
Target:  5'- aCGCu-CGCaCGGUGACGGCCUUguugaaCGCCu -3'
miRNA:   3'- aGCGcuGCG-GUCGUUGUUGGAG------GCGG- -5'
31897 3' -56.9 NC_006938.1 + 51111 0.67 0.635948
Target:  5'- aUCGUGGCGaUCAGCAcGCGGCggUCGUCa -3'
miRNA:   3'- -AGCGCUGC-GGUCGU-UGUUGgaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 44233 0.66 0.693631
Target:  5'- cCGCGuccaugaagaaccgUGCCAcCucCGGCCUCCGCCc -3'
miRNA:   3'- aGCGCu-------------GCGGUcGuuGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 48211 0.66 0.657404
Target:  5'- cCGCcaGCGCCAGCcgUAGgCUCC-CCa -3'
miRNA:   3'- aGCGc-UGCGGUCGuuGUUgGAGGcGG- -5'
31897 3' -56.9 NC_006938.1 + 24300 0.67 0.635948
Target:  5'- gUCGCGGCGUUGGacgGACcACCgUuuGCCg -3'
miRNA:   3'- -AGCGCUGCGGUCg--UUGuUGG-AggCGG- -5'
31897 3' -56.9 NC_006938.1 + 40069 0.67 0.614478
Target:  5'- cUGgGcCGCCuucuGCAGCu-CCUCUGCCc -3'
miRNA:   3'- aGCgCuGCGGu---CGUUGuuGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 32931 0.66 0.686213
Target:  5'- gUCGCGGCuCgGGCGcguucgugcucccgACGACCUCCucggucucccaGCCc -3'
miRNA:   3'- -AGCGCUGcGgUCGU--------------UGUUGGAGG-----------CGG- -5'
31897 3' -56.9 NC_006938.1 + 5184 0.66 0.67877
Target:  5'- cCGCuGgGCCAGCGGCAGCaggaaCGCg -3'
miRNA:   3'- aGCGcUgCGGUCGUUGUUGgag--GCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.