miRNA display CGI


Results 1 - 20 of 133 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 54192 1.12 0.000574
Target:  5'- cUCGCGACGCCAGCAACAACCUCCGCCu -3'
miRNA:   3'- -AGCGCUGCGGUCGUUGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 33447 0.83 0.064735
Target:  5'- gCGCGaACGCCcaGGCAGaacuccCAGCCUCCGCCg -3'
miRNA:   3'- aGCGC-UGCGG--UCGUU------GUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 25034 0.78 0.14062
Target:  5'- aUCGCGGCGUUcagGGCGGCGAUgUCCGCg -3'
miRNA:   3'- -AGCGCUGCGG---UCGUUGUUGgAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 46315 0.77 0.165189
Target:  5'- -gGCGAcCGCCuGCGACuccuucucGAUCUCCGCCa -3'
miRNA:   3'- agCGCU-GCGGuCGUUG--------UUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 42435 0.76 0.18854
Target:  5'- -aGCGACGCCuGCcACucCCUCgGCCg -3'
miRNA:   3'- agCGCUGCGGuCGuUGuuGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 29888 0.76 0.198668
Target:  5'- -aGCGGaGCCAGaucCAGCAcCCUCCGCCu -3'
miRNA:   3'- agCGCUgCGGUC---GUUGUuGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 9164 0.75 0.220349
Target:  5'- gUGCGuCGCCAGCucUGGCCaCCGCCg -3'
miRNA:   3'- aGCGCuGCGGUCGuuGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 15095 0.75 0.220349
Target:  5'- uUUGCcACGCCAGacuGCGugggccggACCUCCGCCa -3'
miRNA:   3'- -AGCGcUGCGGUCgu-UGU--------UGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 14893 0.73 0.276526
Target:  5'- gUGUGACGUCAGCGuuguuccggACGGCCUuggUCGCCu -3'
miRNA:   3'- aGCGCUGCGGUCGU---------UGUUGGA---GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 51405 0.73 0.283429
Target:  5'- gCGUGugGCCGGCcAUcGCCgCCGCUg -3'
miRNA:   3'- aGCGCugCGGUCGuUGuUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 13183 0.73 0.297643
Target:  5'- aUGCGACG--AGCggUGGCCUCCGCUc -3'
miRNA:   3'- aGCGCUGCggUCGuuGUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 31884 0.73 0.297643
Target:  5'- gCGCGuaguACGCCAGgAACuugGCCgCCGCCc -3'
miRNA:   3'- aGCGC----UGCGGUCgUUGu--UGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 50842 0.73 0.297643
Target:  5'- gUGUGACGCgGG--GCGAgCUCCGCCa -3'
miRNA:   3'- aGCGCUGCGgUCguUGUUgGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 32708 0.72 0.333201
Target:  5'- gUCGuCGGCgGCCAGUgccccagagaccucGGCGACCUCCuCCa -3'
miRNA:   3'- -AGC-GCUG-CGGUCG--------------UUGUUGGAGGcGG- -5'
31897 3' -56.9 NC_006938.1 + 62762 0.72 0.334781
Target:  5'- -gGCGGCcacaccgGCUGGCAACAcuggagACCUCCGCa -3'
miRNA:   3'- agCGCUG-------CGGUCGUUGU------UGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 25511 0.72 0.34357
Target:  5'- -aGUGGUGCCAGCGGCcuuGGCCaUCCGCUc -3'
miRNA:   3'- agCGCUGCGGUCGUUG---UUGG-AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 12667 0.72 0.359973
Target:  5'- cUCGCGgaagGCGUUgAGC-ACGACCUCgGCCg -3'
miRNA:   3'- -AGCGC----UGCGG-UCGuUGUUGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 12431 0.72 0.359973
Target:  5'- uUCGCGA-GCCAcuucGUGACGACCgCCGCg -3'
miRNA:   3'- -AGCGCUgCGGU----CGUUGUUGGaGGCGg -5'
31897 3' -56.9 NC_006938.1 + 50761 0.71 0.368376
Target:  5'- cCGgGGCacuGCgCGGCGACGAgCUCCGCUc -3'
miRNA:   3'- aGCgCUG---CG-GUCGUUGUUgGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 35815 0.71 0.368376
Target:  5'- gCGCcagugGGCGuCCAacauucGCAACucuGACCUCCGCCg -3'
miRNA:   3'- aGCG-----CUGC-GGU------CGUUG---UUGGAGGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.