miRNA display CGI


Results 21 - 40 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 60065 0.71 0.376054
Target:  5'- --aCGugGCCGGggcCAACAACCucaccguUCCGCCa -3'
miRNA:   3'- agcGCugCGGUC---GUUGUUGG-------AGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 18341 0.71 0.376914
Target:  5'- cUGCGAaGCU-GCAuguCAACCUCCGUCa -3'
miRNA:   3'- aGCGCUgCGGuCGUu--GUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 23140 0.71 0.380366
Target:  5'- gCGCGGCGUCGGUGAUcuGGCCUCgcuugagauccuugaUGCCg -3'
miRNA:   3'- aGCGCUGCGGUCGUUG--UUGGAG---------------GCGG- -5'
31897 3' -56.9 NC_006938.1 + 51513 0.71 0.391731
Target:  5'- cCGCGugGaacaaccugcCCGGCGcguucaucgagaucGCAACCgCCGCCa -3'
miRNA:   3'- aGCGCugC----------GGUCGU--------------UGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 29287 0.71 0.394385
Target:  5'- -aGUaGACGCCcuggcccuGCGGCucguuGACCUCCGCCu -3'
miRNA:   3'- agCG-CUGCGGu-------CGUUG-----UUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 15971 0.71 0.411459
Target:  5'- cCGUGACGCCGGUgauguccaguGACGuggucguACUUCcCGCCg -3'
miRNA:   3'- aGCGCUGCGGUCG----------UUGU-------UGGAG-GCGG- -5'
31897 3' -56.9 NC_006938.1 + 62552 0.71 0.41237
Target:  5'- gCGCGACGCguCGGCGGCcgagGAgUUCCGUCu -3'
miRNA:   3'- aGCGCUGCG--GUCGUUG----UUgGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 15338 0.71 0.41237
Target:  5'- aCGaUGGCGCCAcGCAGC-ACCUCUGaCUg -3'
miRNA:   3'- aGC-GCUGCGGU-CGUUGuUGGAGGC-GG- -5'
31897 3' -56.9 NC_006938.1 + 33736 0.7 0.420628
Target:  5'- aC-CGACGuCCGGCAuGCAGCaggacggcaugaaCUCCGCCa -3'
miRNA:   3'- aGcGCUGC-GGUCGU-UGUUG-------------GAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 61779 0.7 0.421551
Target:  5'- gCGCGGCgGUCGGCAGgAuguucAUCUCCGCg -3'
miRNA:   3'- aGCGCUG-CGGUCGUUgU-----UGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 28590 0.7 0.440277
Target:  5'- uUCGCGcucuaucaGCaGGCGAuCGACCUCCGUCu -3'
miRNA:   3'- -AGCGCug------CGgUCGUU-GUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 21222 0.7 0.458497
Target:  5'- aUCGUGGCGgCGGacugggugcacguCGACGucgaucCCUCCGCCg -3'
miRNA:   3'- -AGCGCUGCgGUC-------------GUUGUu-----GGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 60336 0.7 0.459467
Target:  5'- gCGCGGCgGCCcuCAGC-GCCUCUGCa -3'
miRNA:   3'- aGCGCUG-CGGucGUUGuUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 61198 0.7 0.459467
Target:  5'- -gGCcAUGUCGGCGACGGCCUUgGUCu -3'
miRNA:   3'- agCGcUGCGGUCGUUGUUGGAGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 45438 0.69 0.469227
Target:  5'- cUGCGAUGCCAuaGACG-CCUUCGUg -3'
miRNA:   3'- aGCGCUGCGGUcgUUGUuGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 51015 0.69 0.469227
Target:  5'- gCGCguucGACGCU-GCcACcggGGCCUCCGCCg -3'
miRNA:   3'- aGCG----CUGCGGuCGuUG---UUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 53704 0.69 0.479092
Target:  5'- cCGCGuACGCCcuGGaGACgAACCUCCGUg -3'
miRNA:   3'- aGCGC-UGCGG--UCgUUG-UUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 27902 0.69 0.479092
Target:  5'- -gGCGACGgaCAGCAucu-CCUCgCGCCa -3'
miRNA:   3'- agCGCUGCg-GUCGUuguuGGAG-GCGG- -5'
31897 3' -56.9 NC_006938.1 + 14843 0.69 0.479092
Target:  5'- cUUGCGA-GCCAGCGu--GCCaUCGCCa -3'
miRNA:   3'- -AGCGCUgCGGUCGUuguUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 21699 0.69 0.489058
Target:  5'- gCGUGACuGUgAGCGACGGCaaCUCCaGCCc -3'
miRNA:   3'- aGCGCUG-CGgUCGUUGUUG--GAGG-CGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.