miRNA display CGI


Results 41 - 60 of 133 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31897 3' -56.9 NC_006938.1 + 16907 0.66 0.67877
Target:  5'- aCGCGGagaaGCuggcagaguuCAGCAAgAACCcacCCGCCg -3'
miRNA:   3'- aGCGCUg---CG----------GUCGUUgUUGGa--GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 17200 0.68 0.561206
Target:  5'- -gGUGG-GCCAGCuggucuGCcACCUCCGCg -3'
miRNA:   3'- agCGCUgCGGUCGu-----UGuUGGAGGCGg -5'
31897 3' -56.9 NC_006938.1 + 17263 0.68 0.561206
Target:  5'- -gGCGGuCGCCAu---CAACgUCCGCCg -3'
miRNA:   3'- agCGCU-GCGGUcguuGUUGgAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 17551 0.66 0.657404
Target:  5'- gUGCGACaugagaaCGGCGACAACCUggaCGCg -3'
miRNA:   3'- aGCGCUGcg-----GUCGUUGUUGGAg--GCGg -5'
31897 3' -56.9 NC_006938.1 + 18341 0.71 0.376914
Target:  5'- cUGCGAaGCU-GCAuguCAACCUCCGUCa -3'
miRNA:   3'- aGCGCUgCGGuCGUu--GUUGGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 18448 0.68 0.550684
Target:  5'- aCGUGAacaUG-CAGCAGCAGCCgucCCGCg -3'
miRNA:   3'- aGCGCU---GCgGUCGUUGUUGGa--GGCGg -5'
31897 3' -56.9 NC_006938.1 + 18973 0.68 0.550684
Target:  5'- aUGUGAgGcCCAGCGACAGUC-CCGUCa -3'
miRNA:   3'- aGCGCUgC-GGUCGUUGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 19498 0.67 0.614478
Target:  5'- -aGUGACuCacacaGGCGACGACCU-CGCCa -3'
miRNA:   3'- agCGCUGcGg----UCGUUGUUGGAgGCGG- -5'
31897 3' -56.9 NC_006938.1 + 19903 0.69 0.49912
Target:  5'- cCGCGugGUUGGCAugggauacaACGGCUUCC-CCg -3'
miRNA:   3'- aGCGCugCGGUCGU---------UGUUGGAGGcGG- -5'
31897 3' -56.9 NC_006938.1 + 20115 0.66 0.689395
Target:  5'- cCGCGugGUCuccugGGCcuccGACAACCagCGCUg -3'
miRNA:   3'- aGCGCugCGG-----UCG----UUGUUGGagGCGG- -5'
31897 3' -56.9 NC_006938.1 + 21222 0.7 0.458497
Target:  5'- aUCGUGGCGgCGGacugggugcacguCGACGucgaucCCUCCGCCg -3'
miRNA:   3'- -AGCGCUGCgGUC-------------GUUGUu-----GGAGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 21699 0.69 0.489058
Target:  5'- gCGUGACuGUgAGCGACGGCaaCUCCaGCCc -3'
miRNA:   3'- aGCGCUG-CGgUCGUUGUUG--GAGG-CGG- -5'
31897 3' -56.9 NC_006938.1 + 23140 0.71 0.380366
Target:  5'- gCGCGGCGUCGGUGAUcuGGCCUCgcuugagauccuugaUGCCg -3'
miRNA:   3'- aGCGCUGCGGUCGUUG--UUGGAG---------------GCGG- -5'
31897 3' -56.9 NC_006938.1 + 23683 0.68 0.52983
Target:  5'- gCGCGACGUCGGCcagGGCGGCa-UgGCCg -3'
miRNA:   3'- aGCGCUGCGGUCG---UUGUUGgaGgCGG- -5'
31897 3' -56.9 NC_006938.1 + 24235 0.66 0.699968
Target:  5'- aUCGUGAaGCuCGGCAcCcgGACCgaCCGCCa -3'
miRNA:   3'- -AGCGCUgCG-GUCGUuG--UUGGa-GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 24300 0.67 0.635948
Target:  5'- gUCGCGGCGUUGGacgGACcACCgUuuGCCg -3'
miRNA:   3'- -AGCGCUGCGGUCg--UUGuUGG-AggCGG- -5'
31897 3' -56.9 NC_006938.1 + 24500 0.66 0.668103
Target:  5'- cUCGUacAUGCCAGCGAC-ACCagcggugCCGUCg -3'
miRNA:   3'- -AGCGc-UGCGGUCGUUGuUGGa------GGCGG- -5'
31897 3' -56.9 NC_006938.1 + 24762 0.66 0.67877
Target:  5'- uUC-CGGC-CCAGCAagaagggcgcgGCGAUCgCCGCCa -3'
miRNA:   3'- -AGcGCUGcGGUCGU-----------UGUUGGaGGCGG- -5'
31897 3' -56.9 NC_006938.1 + 24900 0.68 0.571782
Target:  5'- gUCGCGAUggaGUCAGCGGgAuCCUCaccuGCCa -3'
miRNA:   3'- -AGCGCUG---CGGUCGUUgUuGGAGg---CGG- -5'
31897 3' -56.9 NC_006938.1 + 25034 0.78 0.14062
Target:  5'- aUCGCGGCGUUcagGGCGGCGAUgUCCGCg -3'
miRNA:   3'- -AGCGCUGCGG---UCGUUGUUGgAGGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.