Results 1 - 20 of 29 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31898 | 5' | -53.9 | NC_006938.1 | + | 1792 | 0.67 | 0.808454 |
Target: 5'- uCCUGccgaccgccgcGCGACCCCuguccGGGCUUCAGaccuacacCGGCu -3' miRNA: 3'- -GGAC-----------UGCUGGGG-----CCUGAAGUU--------GCUGu -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 4830 | 0.67 | 0.779718 |
Target: 5'- aCCUGGCaccGGCCgaGGAgUUCGGCGAg- -3' miRNA: 3'- -GGACUG---CUGGggCCUgAAGUUGCUgu -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 10213 | 0.69 | 0.686679 |
Target: 5'- --gGACGuucucacagucGCCCaGGGCUUCGugGACAg -3' miRNA: 3'- ggaCUGC-----------UGGGgCCUGAAGUugCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 12083 | 0.66 | 0.835578 |
Target: 5'- gCCUcGACuGCCCCGG-CUcCGgccGCGACGa -3' miRNA: 3'- -GGA-CUGcUGGGGCCuGAaGU---UGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 19635 | 0.72 | 0.512274 |
Target: 5'- aCCagGACGGCCUCcagcagaaggccaaGGACUUCGGCGAg- -3' miRNA: 3'- -GGa-CUGCUGGGG--------------CCUGAAGUUGCUgu -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 20303 | 0.66 | 0.868807 |
Target: 5'- --gGACGgcACUCCGGACgUCAACcACAu -3' miRNA: 3'- ggaCUGC--UGGGGCCUGaAGUUGcUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 20627 | 0.68 | 0.759802 |
Target: 5'- aCCUGACaGGCaaCUCGGACUUUu-UGACAg -3' miRNA: 3'- -GGACUG-CUG--GGGCCUGAAGuuGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 22416 | 0.67 | 0.817687 |
Target: 5'- gCgaGACGGCCCUGG---UCAugcGCGGCAa -3' miRNA: 3'- -GgaCUGCUGGGGCCugaAGU---UGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 23192 | 0.75 | 0.367135 |
Target: 5'- aCCUGcCGACCCUGGaggagugcagggaccAgUUCGACGACGu -3' miRNA: 3'- -GGACuGCUGGGGCC---------------UgAAGUUGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 26030 | 0.66 | 0.835578 |
Target: 5'- -aUGGCGGCCUCGuccaGCUUgcCAGCGGCGg -3' miRNA: 3'- ggACUGCUGGGGCc---UGAA--GUUGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 27369 | 0.7 | 0.632705 |
Target: 5'- -aUGGCGuCCCCGucGAUggCAGCGACAc -3' miRNA: 3'- ggACUGCuGGGGC--CUGaaGUUGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 29297 | 0.68 | 0.769829 |
Target: 5'- aCCUGguGCGACgccaCCgGGACggaGACGACAu -3' miRNA: 3'- -GGAC--UGCUG----GGgCCUGaagUUGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 33770 | 0.67 | 0.799041 |
Target: 5'- uCCgccaACGACCCCGG-CUggaagCAguACGACGc -3' miRNA: 3'- -GGac--UGCUGGGGCCuGAa----GU--UGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 35081 | 0.67 | 0.789459 |
Target: 5'- cCCUGACGAUCUagaGGAagaugaCGAUGACGa -3' miRNA: 3'- -GGACUGCUGGGg--CCUgaa---GUUGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 37599 | 0.7 | 0.632705 |
Target: 5'- cCCaGACGGCCCC--GCUggAGCGACAg -3' miRNA: 3'- -GGaCUGCUGGGGccUGAagUUGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 40252 | 0.67 | 0.799041 |
Target: 5'- cCCUGGCaaACUCgaCGGACaUCGACGACu -3' miRNA: 3'- -GGACUGc-UGGG--GCCUGaAGUUGCUGu -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 40435 | 0.67 | 0.799041 |
Target: 5'- aCC-GACGccGCgCCGGACUUUguccgugucgggGACGACAc -3' miRNA: 3'- -GGaCUGC--UGgGGCCUGAAG------------UUGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 47819 | 0.85 | 0.090529 |
Target: 5'- gUCUGgcGCGACCCCGGACgcggacaUCAGCGGCAg -3' miRNA: 3'- -GGAC--UGCUGGGGCCUGa------AGUUGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 48336 | 0.67 | 0.799041 |
Target: 5'- gCCUGA--ACCCCGG-CUcgGGCGGCGg -3' miRNA: 3'- -GGACUgcUGGGGCCuGAagUUGCUGU- -5' |
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31898 | 5' | -53.9 | NC_006938.1 | + | 50752 | 0.7 | 0.654364 |
Target: 5'- gCCUGGCG-UCCgGGGCacugcgCGGCGACGa -3' miRNA: 3'- -GGACUGCuGGGgCCUGaa----GUUGCUGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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