Results 1 - 20 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31899 | 5' | -54.1 | NC_006938.1 | + | 55547 | 1.15 | 0.000725 |
Target: 5'- gGCGUCGACGUAUGGCACUGCCAUCCCg -3' miRNA: 3'- -CGCAGCUGCAUACCGUGACGGUAGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 42063 | 0.76 | 0.312295 |
Target: 5'- ---aCGACGgugccuucGGCGCUGCCAUCCUg -3' miRNA: 3'- cgcaGCUGCaua-----CCGUGACGGUAGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 16041 | 0.75 | 0.335797 |
Target: 5'- cGCGUCGGCGUAUcgGGC-CUcGCCccugCCCu -3' miRNA: 3'- -CGCAGCUGCAUA--CCGuGA-CGGua--GGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 42003 | 0.74 | 0.386577 |
Target: 5'- uCGUCGAac-GUGGCAUcagUGCCAUCCUc -3' miRNA: 3'- cGCAGCUgcaUACCGUG---ACGGUAGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 20388 | 0.73 | 0.413797 |
Target: 5'- -gGUUGACGUccGG-AgUGCCGUCCCg -3' miRNA: 3'- cgCAGCUGCAuaCCgUgACGGUAGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 7497 | 0.72 | 0.512321 |
Target: 5'- cGgGUCGACGaGUGGCugGCauccgGCCAcUCCCc -3' miRNA: 3'- -CgCAGCUGCaUACCG--UGa----CGGU-AGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 9844 | 0.71 | 0.543785 |
Target: 5'- cGCGUUGGCGag-GGCugUGaCacccaGUCCCa -3' miRNA: 3'- -CGCAGCUGCauaCCGugAC-Gg----UAGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 57906 | 0.71 | 0.565109 |
Target: 5'- cGCGacaUCGACGaUAcggcUGGC-CUGgCGUCCCg -3' miRNA: 3'- -CGC---AGCUGC-AU----ACCGuGACgGUAGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 35649 | 0.7 | 0.607244 |
Target: 5'- cCGcCGAgGUGUGGCGCgaggagaUGCUGUCCg -3' miRNA: 3'- cGCaGCUgCAUACCGUG-------ACGGUAGGg -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 39011 | 0.7 | 0.617031 |
Target: 5'- uUGUCGACGauggcaugccgaAUGGCACUGCCG-CUg -3' miRNA: 3'- cGCAGCUGCa-----------UACCGUGACGGUaGGg -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 54545 | 0.7 | 0.619208 |
Target: 5'- ---aCcACGUggGGCACUGCCGUCUUg -3' miRNA: 3'- cgcaGcUGCAuaCCGUGACGGUAGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 53499 | 0.7 | 0.630096 |
Target: 5'- -gGUCGGucuCGgugagGGCACUGCUGUCCa -3' miRNA: 3'- cgCAGCU---GCaua--CCGUGACGGUAGGg -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 53851 | 0.69 | 0.671404 |
Target: 5'- cGCGUCGaaguucaagagcagcGCGUAUGGCGCggcgagguucagcagUGUCgAUCCa -3' miRNA: 3'- -CGCAGC---------------UGCAUACCGUG---------------ACGG-UAGGg -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 19935 | 0.69 | 0.688672 |
Target: 5'- cCGUCGGCGUGgaggacuccagggaGGC-CUGgaggaCCGUCCCa -3' miRNA: 3'- cGCAGCUGCAUa-------------CCGuGAC-----GGUAGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 24389 | 0.68 | 0.695116 |
Target: 5'- cCGUCGAgcaccuCGUGgaGGCGCuuguUGCCGUCCa -3' miRNA: 3'- cGCAGCU------GCAUa-CCGUG----ACGGUAGGg -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 17054 | 0.68 | 0.716424 |
Target: 5'- cGCGUUGAUGccguUGGCACggaGCCAagUCUg -3' miRNA: 3'- -CGCAGCUGCau--ACCGUGa--CGGU--AGGg -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 34759 | 0.68 | 0.726961 |
Target: 5'- cGCGUCG-CGgcccGG-ACUGCCA-CCCu -3' miRNA: 3'- -CGCAGCuGCaua-CCgUGACGGUaGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 51398 | 0.68 | 0.726961 |
Target: 5'- --uUCGagaGCGUGUGGC-CgGCCAUCgCCg -3' miRNA: 3'- cgcAGC---UGCAUACCGuGaCGGUAG-GG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 27255 | 0.68 | 0.726961 |
Target: 5'- cGCcUCGACGU--GGCGC-GCCAUCg- -3' miRNA: 3'- -CGcAGCUGCAuaCCGUGaCGGUAGgg -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 62758 | 0.67 | 0.757974 |
Target: 5'- aGCGaCGugGUAccaGGUguccACUGCCAugaccguggUCCCg -3' miRNA: 3'- -CGCaGCugCAUa--CCG----UGACGGU---------AGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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