miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31899 5' -54.1 NC_006938.1 + 111 0.67 0.768074
Target:  5'- cGCGUCGACG-GUGGUcgaGCCAcCgCCa -3'
miRNA:   3'- -CGCAGCUGCaUACCGugaCGGUaG-GG- -5'
31899 5' -54.1 NC_006938.1 + 7497 0.72 0.512321
Target:  5'- cGgGUCGACGaGUGGCugGCauccgGCCAcUCCCc -3'
miRNA:   3'- -CgCAGCUGCaUACCG--UGa----CGGU-AGGG- -5'
31899 5' -54.1 NC_006938.1 + 8299 0.66 0.843053
Target:  5'- -gGUCGGCGaccGGCucguCUGCCuGUCCa -3'
miRNA:   3'- cgCAGCUGCauaCCGu---GACGG-UAGGg -5'
31899 5' -54.1 NC_006938.1 + 9844 0.71 0.543785
Target:  5'- cGCGUUGGCGag-GGCugUGaCacccaGUCCCa -3'
miRNA:   3'- -CGCAGCUGCauaCCGugAC-Gg----UAGGG- -5'
31899 5' -54.1 NC_006938.1 + 16041 0.75 0.335797
Target:  5'- cGCGUCGGCGUAUcgGGC-CUcGCCccugCCCu -3'
miRNA:   3'- -CGCAGCUGCAUA--CCGuGA-CGGua--GGG- -5'
31899 5' -54.1 NC_006938.1 + 17054 0.68 0.716424
Target:  5'- cGCGUUGAUGccguUGGCACggaGCCAagUCUg -3'
miRNA:   3'- -CGCAGCUGCau--ACCGUGa--CGGU--AGGg -5'
31899 5' -54.1 NC_006938.1 + 19935 0.69 0.688672
Target:  5'- cCGUCGGCGUGgaggacuccagggaGGC-CUGgaggaCCGUCCCa -3'
miRNA:   3'- cGCAGCUGCAUa-------------CCGuGAC-----GGUAGGG- -5'
31899 5' -54.1 NC_006938.1 + 20388 0.73 0.413797
Target:  5'- -gGUUGACGUccGG-AgUGCCGUCCCg -3'
miRNA:   3'- cgCAGCUGCAuaCCgUgACGGUAGGG- -5'
31899 5' -54.1 NC_006938.1 + 24389 0.68 0.695116
Target:  5'- cCGUCGAgcaccuCGUGgaGGCGCuuguUGCCGUCCa -3'
miRNA:   3'- cGCAGCU------GCAUa-CCGUG----ACGGUAGGg -5'
31899 5' -54.1 NC_006938.1 + 27255 0.68 0.726961
Target:  5'- cGCcUCGACGU--GGCGC-GCCAUCg- -3'
miRNA:   3'- -CGcAGCUGCAuaCCGUGaCGGUAGgg -5'
31899 5' -54.1 NC_006938.1 + 34680 0.66 0.816304
Target:  5'- gGCGUCGGCGUccGUcGGCAg-GUCGagCCg -3'
miRNA:   3'- -CGCAGCUGCA--UA-CCGUgaCGGUagGG- -5'
31899 5' -54.1 NC_006938.1 + 34759 0.68 0.726961
Target:  5'- cGCGUCG-CGgcccGG-ACUGCCA-CCCu -3'
miRNA:   3'- -CGCAGCuGCaua-CCgUGACGGUaGGG- -5'
31899 5' -54.1 NC_006938.1 + 35649 0.7 0.607244
Target:  5'- cCGcCGAgGUGUGGCGCgaggagaUGCUGUCCg -3'
miRNA:   3'- cGCaGCUgCAUACCGUG-------ACGGUAGGg -5'
31899 5' -54.1 NC_006938.1 + 37250 0.66 0.834342
Target:  5'- aGCGgCGGCGcuaGUGGCGCgacUCGUUCCa -3'
miRNA:   3'- -CGCaGCUGCa--UACCGUGac-GGUAGGG- -5'
31899 5' -54.1 NC_006938.1 + 37908 0.67 0.794629
Target:  5'- aGUGacacCGACGUugucucgugucacaAUGGCACcGUCGUCCUc -3'
miRNA:   3'- -CGCa---GCUGCA--------------UACCGUGaCGGUAGGG- -5'
31899 5' -54.1 NC_006938.1 + 37951 0.67 0.797509
Target:  5'- gGCGUCGGCuc-UGGCGCgaGCaa-CCCg -3'
miRNA:   3'- -CGCAGCUGcauACCGUGa-CGguaGGG- -5'
31899 5' -54.1 NC_006938.1 + 38858 0.67 0.768074
Target:  5'- uCGUUGGCGUAgucaGCACUGUCGUUg- -3'
miRNA:   3'- cGCAGCUGCAUac--CGUGACGGUAGgg -5'
31899 5' -54.1 NC_006938.1 + 39011 0.7 0.617031
Target:  5'- uUGUCGACGauggcaugccgaAUGGCACUGCCG-CUg -3'
miRNA:   3'- cGCAGCUGCa-----------UACCGUGACGGUaGGg -5'
31899 5' -54.1 NC_006938.1 + 42003 0.74 0.386577
Target:  5'- uCGUCGAac-GUGGCAUcagUGCCAUCCUc -3'
miRNA:   3'- cGCAGCUgcaUACCGUG---ACGGUAGGG- -5'
31899 5' -54.1 NC_006938.1 + 42063 0.76 0.312295
Target:  5'- ---aCGACGgugccuucGGCGCUGCCAUCCUg -3'
miRNA:   3'- cgcaGCUGCaua-----CCGUGACGGUAGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.