Results 21 - 31 of 31 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31899 | 5' | -54.1 | NC_006938.1 | + | 44726 | 0.66 | 0.834342 |
Target: 5'- aGgGgaaGAUGUgcaucGUGGgACUGCCGUCgCCu -3' miRNA: 3'- -CgCag-CUGCA-----UACCgUGACGGUAG-GG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 51398 | 0.68 | 0.726961 |
Target: 5'- --uUCGagaGCGUGUGGC-CgGCCAUCgCCg -3' miRNA: 3'- cgcAGC---UGCAUACCGuGaCGGUAG-GG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 53499 | 0.7 | 0.630096 |
Target: 5'- -gGUCGGucuCGgugagGGCACUGCUGUCCa -3' miRNA: 3'- cgCAGCU---GCaua--CCGUGACGGUAGGg -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 53851 | 0.69 | 0.671404 |
Target: 5'- cGCGUCGaaguucaagagcagcGCGUAUGGCGCggcgagguucagcagUGUCgAUCCa -3' miRNA: 3'- -CGCAGC---------------UGCAUACCGUG---------------ACGG-UAGGg -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 54280 | 0.67 | 0.797509 |
Target: 5'- gGCGUCuGugGUcuacAUcGGCAagcGCCGUUCCa -3' miRNA: 3'- -CGCAG-CugCA----UA-CCGUga-CGGUAGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 54545 | 0.7 | 0.619208 |
Target: 5'- ---aCcACGUggGGCACUGCCGUCUUg -3' miRNA: 3'- cgcaGcUGCAuaCCGUGACGGUAGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 55547 | 1.15 | 0.000725 |
Target: 5'- gGCGUCGACGUAUGGCACUGCCAUCCCg -3' miRNA: 3'- -CGCAGCUGCAUACCGUGACGGUAGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 56142 | 0.66 | 0.816304 |
Target: 5'- aUGUCGACcUGgaaggaGGCGCUGUCGUCa- -3' miRNA: 3'- cGCAGCUGcAUa-----CCGUGACGGUAGgg -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 57906 | 0.71 | 0.565109 |
Target: 5'- cGCGacaUCGACGaUAcggcUGGC-CUGgCGUCCCg -3' miRNA: 3'- -CGC---AGCUGC-AU----ACCGuGACgGUAGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 58580 | 0.66 | 0.816304 |
Target: 5'- gGCGcUCGugGaUGgccugGGCACUGUCc-CCCu -3' miRNA: 3'- -CGC-AGCugC-AUa----CCGUGACGGuaGGG- -5' |
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31899 | 5' | -54.1 | NC_006938.1 | + | 62758 | 0.67 | 0.757974 |
Target: 5'- aGCGaCGugGUAccaGGUguccACUGCCAugaccguggUCCCg -3' miRNA: 3'- -CGCaGCugCAUa--CCG----UGACGGU---------AGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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