Results 41 - 51 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31901 | 5' | -53 | NC_006938.1 | + | 7307 | 0.71 | 0.584174 |
Target: 5'- aGCugGUCGGACAG-ACCGCCauugucuGGCUUc -3' miRNA: 3'- cCGugCAGCUUGUUgUGGUGG-------UCGAA- -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 8197 | 0.71 | 0.563225 |
Target: 5'- cGCACGUCGAGC----CgACCAGCUUa -3' miRNA: 3'- cCGUGCAGCUUGuuguGgUGGUCGAA- -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 30713 | 0.71 | 0.55665 |
Target: 5'- cGGcCACGaugucccagcugcccUCGAGCcACGCgGCCAGCUUg -3' miRNA: 3'- -CC-GUGC---------------AGCUUGuUGUGgUGGUCGAA- -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 33570 | 0.72 | 0.530589 |
Target: 5'- cGGUuCGUCG-GCAACcgugccGCCACCGGCUc -3' miRNA: 3'- -CCGuGCAGCuUGUUG------UGGUGGUCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 26726 | 0.72 | 0.51986 |
Target: 5'- uGGCuACGUCG-GCAuCGCCAgCCAGCa- -3' miRNA: 3'- -CCG-UGCAGCuUGUuGUGGU-GGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 1894 | 0.72 | 0.489256 |
Target: 5'- cGGCGCGcuaUGAGCcggcaaaguucaacuACACCACCGGCUg -3' miRNA: 3'- -CCGUGCa--GCUUGu--------------UGUGGUGGUCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 8237 | 0.73 | 0.477868 |
Target: 5'- -aCGCGUCGAGCGGCGaauaagaggauCCGCCAGUUc -3' miRNA: 3'- ccGUGCAGCUUGUUGU-----------GGUGGUCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 39021 | 0.73 | 0.46763 |
Target: 5'- uGGCAUGcCGAAUGGCACUGCC-GCUg -3' miRNA: 3'- -CCGUGCaGCUUGUUGUGGUGGuCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 38114 | 0.75 | 0.363353 |
Target: 5'- aGCugGUCGAACGGCAgcuCCACguGCa- -3' miRNA: 3'- cCGugCAGCUUGUUGU---GGUGguCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 11614 | 0.76 | 0.321579 |
Target: 5'- cGGCAgaUCGGGCGGCACCGCCgAGCc- -3' miRNA: 3'- -CCGUgcAGCUUGUUGUGGUGG-UCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 56323 | 1.07 | 0.002518 |
Target: 5'- uGGCACGUCGAACAACACCACCAGCUUc -3' miRNA: 3'- -CCGUGCAGCUUGUUGUGGUGGUCGAA- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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