miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31901 5' -53 NC_006938.1 + 47414 0.68 0.760716
Target:  5'- cGCGCGgaaccCGAuCAACAcgucCCGCCAGCg- -3'
miRNA:   3'- cCGUGCa----GCUuGUUGU----GGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 36724 0.68 0.760716
Target:  5'- cGCuCGUCG-ACGACAUCggcaACCGGCUg -3'
miRNA:   3'- cCGuGCAGCuUGUUGUGG----UGGUCGAa -5'
31901 5' -53 NC_006938.1 + 11079 0.68 0.750269
Target:  5'- cGGCGCGcUgGAGCGGCacaucGCCGCCuuGGCa- -3'
miRNA:   3'- -CCGUGC-AgCUUGUUG-----UGGUGG--UCGaa -5'
31901 5' -53 NC_006938.1 + 52829 0.68 0.750269
Target:  5'- uGGCACcaCGGacggcaGCAACGCCAcguuCCAGCUc -3'
miRNA:   3'- -CCGUGcaGCU------UGUUGUGGU----GGUCGAa -5'
31901 5' -53 NC_006938.1 + 25446 0.68 0.750269
Target:  5'- uGCACGUgGAGCuGCcguuCgACCAGCUg -3'
miRNA:   3'- cCGUGCAgCUUGuUGu---GgUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 2562 0.68 0.739698
Target:  5'- uGGguUGUCGAuauCGAgGCCACC-GCUg -3'
miRNA:   3'- -CCguGCAGCUu--GUUgUGGUGGuCGAa -5'
31901 5' -53 NC_006938.1 + 11660 0.68 0.739698
Target:  5'- --aGCGUCugcuGCAGCGCCACUGGCg- -3'
miRNA:   3'- ccgUGCAGcu--UGUUGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 23875 0.68 0.739698
Target:  5'- aGGCACa--GuGCAACAUCACUGGCUUc -3'
miRNA:   3'- -CCGUGcagCuUGUUGUGGUGGUCGAA- -5'
31901 5' -53 NC_006938.1 + 56769 0.68 0.729015
Target:  5'- uGGaCAgGUCGGccuugGCcuCGCCGCCAGCg- -3'
miRNA:   3'- -CC-GUgCAGCU-----UGuuGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 51013 0.68 0.729015
Target:  5'- cGGCGCGUUcGACGcUGCCACCGGg-- -3'
miRNA:   3'- -CCGUGCAGcUUGUuGUGGUGGUCgaa -5'
31901 5' -53 NC_006938.1 + 39911 0.68 0.729015
Target:  5'- cGGCACGagGAGaccGCGCCACCGuccGCg- -3'
miRNA:   3'- -CCGUGCagCUUgu-UGUGGUGGU---CGaa -5'
31901 5' -53 NC_006938.1 + 53350 0.69 0.707364
Target:  5'- cGGC-CGUCG-ACAGCAagACCGGCc- -3'
miRNA:   3'- -CCGuGCAGCuUGUUGUggUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 61514 0.69 0.696418
Target:  5'- cGGCcccucgcgucaGCGUUGAGCugccuGAC-CCACCAGCg- -3'
miRNA:   3'- -CCG-----------UGCAGCUUG-----UUGuGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 39859 0.69 0.674347
Target:  5'- gGGCGCGcUCGAGCAucucggccAUGCCGCCcuGGCc- -3'
miRNA:   3'- -CCGUGC-AGCUUGU--------UGUGGUGG--UCGaa -5'
31901 5' -53 NC_006938.1 + 61973 0.7 0.652112
Target:  5'- uGUACGU-GAAUcggGACACCAUCAGCUc -3'
miRNA:   3'- cCGUGCAgCUUG---UUGUGGUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 12555 0.7 0.64096
Target:  5'- uGGCAgCGUCGAACG-CGCCgacuGCCuGCa- -3'
miRNA:   3'- -CCGU-GCAGCUUGUuGUGG----UGGuCGaa -5'
31901 5' -53 NC_006938.1 + 12269 0.7 0.64096
Target:  5'- uGCACGgucguggCGAGCuggcggaacGCGCCACCGGCc- -3'
miRNA:   3'- cCGUGCa------GCUUGu--------UGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 48191 0.7 0.607497
Target:  5'- uGGUcgaaGUCGAAgAACGuCCGCCAGCg- -3'
miRNA:   3'- -CCGug--CAGCUUgUUGU-GGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 32780 0.71 0.585281
Target:  5'- aGGCACaGcCGAACuACAUCGCCcAGCUc -3'
miRNA:   3'- -CCGUG-CaGCUUGuUGUGGUGG-UCGAa -5'
31901 5' -53 NC_006938.1 + 61421 0.71 0.585281
Target:  5'- uGCACGUCGccccaguuGACGGCuGCCACCuGCg- -3'
miRNA:   3'- cCGUGCAGC--------UUGUUG-UGGUGGuCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.