miRNA display CGI


Results 21 - 40 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31901 5' -53 NC_006938.1 + 33570 0.72 0.530589
Target:  5'- cGGUuCGUCG-GCAACcgugccGCCACCGGCUc -3'
miRNA:   3'- -CCGuGCAGCuUGUUG------UGGUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 35915 0.66 0.820148
Target:  5'- aGGCGCGucaUCGGACcgu-UCGCCAGCg- -3'
miRNA:   3'- -CCGUGC---AGCUUGuuguGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 36724 0.68 0.760716
Target:  5'- cGCuCGUCG-ACGACAUCggcaACCGGCUg -3'
miRNA:   3'- cCGuGCAGCuUGUUGUGG----UGGUCGAa -5'
31901 5' -53 NC_006938.1 + 37138 0.67 0.801034
Target:  5'- cGGCGagugccagagauUGUgGAACGagucGCGCCACUAGCg- -3'
miRNA:   3'- -CCGU------------GCAgCUUGU----UGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 38039 0.66 0.829406
Target:  5'- aGCACGcCGAGCGgauggccaAgGCCGCUGGCa- -3'
miRNA:   3'- cCGUGCaGCUUGU--------UgUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 38114 0.75 0.363353
Target:  5'- aGCugGUCGAACGGCAgcuCCACguGCa- -3'
miRNA:   3'- cCGugCAGCUUGUUGU---GGUGguCGaa -5'
31901 5' -53 NC_006938.1 + 39021 0.73 0.46763
Target:  5'- uGGCAUGcCGAAUGGCACUGCC-GCUg -3'
miRNA:   3'- -CCGUGCaGCUUGUUGUGGUGGuCGAa -5'
31901 5' -53 NC_006938.1 + 39572 0.67 0.810687
Target:  5'- cGGC-CGUCGAcuucucggACGACgucgccGCCACUGGCa- -3'
miRNA:   3'- -CCGuGCAGCU--------UGUUG------UGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 39668 0.67 0.781193
Target:  5'- cGCGCGUCGAuC-ACGCCcuugaaGCCAGUg- -3'
miRNA:   3'- cCGUGCAGCUuGuUGUGG------UGGUCGaa -5'
31901 5' -53 NC_006938.1 + 39859 0.69 0.674347
Target:  5'- gGGCGCGcUCGAGCAucucggccAUGCCGCCcuGGCc- -3'
miRNA:   3'- -CCGUGC-AGCUUGU--------UGUGGUGG--UCGaa -5'
31901 5' -53 NC_006938.1 + 39911 0.68 0.729015
Target:  5'- cGGCACGagGAGaccGCGCCACCGuccGCg- -3'
miRNA:   3'- -CCGUGCagCUUgu-UGUGGUGGU---CGaa -5'
31901 5' -53 NC_006938.1 + 41303 0.67 0.781193
Target:  5'- uGGCGCcaCGGuCAACACagaCGCCAGCUc -3'
miRNA:   3'- -CCGUGcaGCUuGUUGUG---GUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 46052 0.66 0.864209
Target:  5'- cGGCccgcCGUCGAugGCAAaGCCauaGCCAGCg- -3'
miRNA:   3'- -CCGu---GCAGCU--UGUUgUGG---UGGUCGaa -5'
31901 5' -53 NC_006938.1 + 47162 0.67 0.810687
Target:  5'- aGCACGUCGAGCu---CgAUCGGCUc -3'
miRNA:   3'- cCGUGCAGCUUGuuguGgUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 47414 0.68 0.760716
Target:  5'- cGCGCGgaaccCGAuCAACAcgucCCGCCAGCg- -3'
miRNA:   3'- cCGUGCa----GCUuGUUGU----GGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 47822 0.66 0.864209
Target:  5'- uGGCGCGacccCGGACGcggACAUCAgCGGCa- -3'
miRNA:   3'- -CCGUGCa---GCUUGU---UGUGGUgGUCGaa -5'
31901 5' -53 NC_006938.1 + 48191 0.7 0.607497
Target:  5'- uGGUcgaaGUCGAAgAACGuCCGCCAGCg- -3'
miRNA:   3'- -CCGug--CAGCUUgUUGU-GGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 50372 0.67 0.781193
Target:  5'- cGGCACGg-GAGCGGagGCCACC-GCUc -3'
miRNA:   3'- -CCGUGCagCUUGUUg-UGGUGGuCGAa -5'
31901 5' -53 NC_006938.1 + 51013 0.68 0.729015
Target:  5'- cGGCGCGUUcGACGcUGCCACCGGg-- -3'
miRNA:   3'- -CCGUGCAGcUUGUuGUGGUGGUCgaa -5'
31901 5' -53 NC_006938.1 + 51478 0.66 0.837556
Target:  5'- gGGUucuCGUCGGcggugacGCGgauCACUGCCAGCUUg -3'
miRNA:   3'- -CCGu--GCAGCU-------UGUu--GUGGUGGUCGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.