miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31901 5' -53 NC_006938.1 + 1894 0.72 0.489256
Target:  5'- cGGCGCGcuaUGAGCcggcaaaguucaacuACACCACCGGCUg -3'
miRNA:   3'- -CCGUGCa--GCUUGu--------------UGUGGUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 2562 0.68 0.739698
Target:  5'- uGGguUGUCGAuauCGAgGCCACC-GCUg -3'
miRNA:   3'- -CCguGCAGCUu--GUUgUGGUGGuCGAa -5'
31901 5' -53 NC_006938.1 + 7307 0.71 0.584174
Target:  5'- aGCugGUCGGACAG-ACCGCCauugucuGGCUUc -3'
miRNA:   3'- cCGugCAGCUUGUUgUGGUGG-------UCGAA- -5'
31901 5' -53 NC_006938.1 + 8197 0.71 0.563225
Target:  5'- cGCACGUCGAGC----CgACCAGCUUa -3'
miRNA:   3'- cCGUGCAGCUUGuuguGgUGGUCGAA- -5'
31901 5' -53 NC_006938.1 + 8237 0.73 0.477868
Target:  5'- -aCGCGUCGAGCGGCGaauaagaggauCCGCCAGUUc -3'
miRNA:   3'- ccGUGCAGCUUGUUGU-----------GGUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 10602 0.67 0.801034
Target:  5'- aGCugGUCGAu--GCACCACCcucgggAGCc- -3'
miRNA:   3'- cCGugCAGCUuguUGUGGUGG------UCGaa -5'
31901 5' -53 NC_006938.1 + 11004 0.66 0.83845
Target:  5'- uGGCAgccuugucuCGUCGA---ACGCCAUCAGUUg -3'
miRNA:   3'- -CCGU---------GCAGCUuguUGUGGUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 11079 0.68 0.750269
Target:  5'- cGGCGCGcUgGAGCGGCacaucGCCGCCuuGGCa- -3'
miRNA:   3'- -CCGUGC-AgCUUGUUG-----UGGUGG--UCGaa -5'
31901 5' -53 NC_006938.1 + 11614 0.76 0.321579
Target:  5'- cGGCAgaUCGGGCGGCACCGCCgAGCc- -3'
miRNA:   3'- -CCGUgcAGCUUGUUGUGGUGG-UCGaa -5'
31901 5' -53 NC_006938.1 + 11660 0.68 0.739698
Target:  5'- --aGCGUCugcuGCAGCGCCACUGGCg- -3'
miRNA:   3'- ccgUGCAGcu--UGUUGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 12269 0.7 0.64096
Target:  5'- uGCACGgucguggCGAGCuggcggaacGCGCCACCGGCc- -3'
miRNA:   3'- cCGUGCa------GCUUGu--------UGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 12555 0.7 0.64096
Target:  5'- uGGCAgCGUCGAACG-CGCCgacuGCCuGCa- -3'
miRNA:   3'- -CCGU-GCAGCUUGUuGUGG----UGGuCGaa -5'
31901 5' -53 NC_006938.1 + 16488 0.66 0.820148
Target:  5'- cGCACaUCGAGCAccacuuccGCACCGCCAu--- -3'
miRNA:   3'- cCGUGcAGCUUGU--------UGUGGUGGUcgaa -5'
31901 5' -53 NC_006938.1 + 21676 0.67 0.771028
Target:  5'- aGC-UGUCGGGCAACcuGCC-CCGGCUc -3'
miRNA:   3'- cCGuGCAGCUUGUUG--UGGuGGUCGAa -5'
31901 5' -53 NC_006938.1 + 22259 0.67 0.781193
Target:  5'- uGGCGucugUGUUGAcCGugGCGCCACCGGCc- -3'
miRNA:   3'- -CCGU----GCAGCUuGU--UGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 23875 0.68 0.739698
Target:  5'- aGGCACa--GuGCAACAUCACUGGCUUc -3'
miRNA:   3'- -CCGUGcagCuUGUUGUGGUGGUCGAA- -5'
31901 5' -53 NC_006938.1 + 25446 0.68 0.750269
Target:  5'- uGCACGUgGAGCuGCcguuCgACCAGCUg -3'
miRNA:   3'- cCGUGCAgCUUGuUGu---GgUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 26726 0.72 0.51986
Target:  5'- uGGCuACGUCG-GCAuCGCCAgCCAGCa- -3'
miRNA:   3'- -CCG-UGCAGCuUGUuGUGGU-GGUCGaa -5'
31901 5' -53 NC_006938.1 + 30713 0.71 0.55665
Target:  5'- cGGcCACGaugucccagcugcccUCGAGCcACGCgGCCAGCUUg -3'
miRNA:   3'- -CC-GUGC---------------AGCUUGuUGUGgUGGUCGAA- -5'
31901 5' -53 NC_006938.1 + 32780 0.71 0.585281
Target:  5'- aGGCACaGcCGAACuACAUCGCCcAGCUc -3'
miRNA:   3'- -CCGUG-CaGCUUGuUGUGGUGG-UCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.