Results 1 - 20 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31901 | 5' | -53 | NC_006938.1 | + | 56323 | 1.07 | 0.002518 |
Target: 5'- uGGCACGUCGAACAACACCACCAGCUUc -3' miRNA: 3'- -CCGUGCAGCUUGUUGUGGUGGUCGAA- -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 11614 | 0.76 | 0.321579 |
Target: 5'- cGGCAgaUCGGGCGGCACCGCCgAGCc- -3' miRNA: 3'- -CCGUgcAGCUUGUUGUGGUGG-UCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 38114 | 0.75 | 0.363353 |
Target: 5'- aGCugGUCGAACGGCAgcuCCACguGCa- -3' miRNA: 3'- cCGugCAGCUUGUUGU---GGUGguCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 39021 | 0.73 | 0.46763 |
Target: 5'- uGGCAUGcCGAAUGGCACUGCC-GCUg -3' miRNA: 3'- -CCGUGCaGCUUGUUGUGGUGGuCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 8237 | 0.73 | 0.477868 |
Target: 5'- -aCGCGUCGAGCGGCGaauaagaggauCCGCCAGUUc -3' miRNA: 3'- ccGUGCAGCUUGUUGU-----------GGUGGUCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 1894 | 0.72 | 0.489256 |
Target: 5'- cGGCGCGcuaUGAGCcggcaaaguucaacuACACCACCGGCUg -3' miRNA: 3'- -CCGUGCa--GCUUGu--------------UGUGGUGGUCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 26726 | 0.72 | 0.51986 |
Target: 5'- uGGCuACGUCG-GCAuCGCCAgCCAGCa- -3' miRNA: 3'- -CCG-UGCAGCuUGUuGUGGU-GGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 33570 | 0.72 | 0.530589 |
Target: 5'- cGGUuCGUCG-GCAACcgugccGCCACCGGCUc -3' miRNA: 3'- -CCGuGCAGCuUGUUG------UGGUGGUCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 30713 | 0.71 | 0.55665 |
Target: 5'- cGGcCACGaugucccagcugcccUCGAGCcACGCgGCCAGCUUg -3' miRNA: 3'- -CC-GUGC---------------AGCUUGuUGUGgUGGUCGAA- -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 8197 | 0.71 | 0.563225 |
Target: 5'- cGCACGUCGAGC----CgACCAGCUUa -3' miRNA: 3'- cCGUGCAGCUUGuuguGgUGGUCGAA- -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 7307 | 0.71 | 0.584174 |
Target: 5'- aGCugGUCGGACAG-ACCGCCauugucuGGCUUc -3' miRNA: 3'- cCGugCAGCUUGUUgUGGUGG-------UCGAA- -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 32780 | 0.71 | 0.585281 |
Target: 5'- aGGCACaGcCGAACuACAUCGCCcAGCUc -3' miRNA: 3'- -CCGUG-CaGCUUGuUGUGGUGG-UCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 61421 | 0.71 | 0.585281 |
Target: 5'- uGCACGUCGccccaguuGACGGCuGCCACCuGCg- -3' miRNA: 3'- cCGUGCAGC--------UUGUUG-UGGUGGuCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 48191 | 0.7 | 0.607497 |
Target: 5'- uGGUcgaaGUCGAAgAACGuCCGCCAGCg- -3' miRNA: 3'- -CCGug--CAGCUUgUUGU-GGUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 12269 | 0.7 | 0.64096 |
Target: 5'- uGCACGgucguggCGAGCuggcggaacGCGCCACCGGCc- -3' miRNA: 3'- cCGUGCa------GCUUGu--------UGUGGUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 12555 | 0.7 | 0.64096 |
Target: 5'- uGGCAgCGUCGAACG-CGCCgacuGCCuGCa- -3' miRNA: 3'- -CCGU-GCAGCUUGUuGUGG----UGGuCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 61973 | 0.7 | 0.652112 |
Target: 5'- uGUACGU-GAAUcggGACACCAUCAGCUc -3' miRNA: 3'- cCGUGCAgCUUG---UUGUGGUGGUCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 39859 | 0.69 | 0.674347 |
Target: 5'- gGGCGCGcUCGAGCAucucggccAUGCCGCCcuGGCc- -3' miRNA: 3'- -CCGUGC-AGCUUGU--------UGUGGUGG--UCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 61514 | 0.69 | 0.696418 |
Target: 5'- cGGCcccucgcgucaGCGUUGAGCugccuGAC-CCACCAGCg- -3' miRNA: 3'- -CCG-----------UGCAGCUUG-----UUGuGGUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 53350 | 0.69 | 0.707364 |
Target: 5'- cGGC-CGUCG-ACAGCAagACCGGCc- -3' miRNA: 3'- -CCGuGCAGCuUGUUGUggUGGUCGaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home