Results 21 - 40 of 51 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31901 | 5' | -53 | NC_006938.1 | + | 56769 | 0.68 | 0.729015 |
Target: 5'- uGGaCAgGUCGGccuugGCcuCGCCGCCAGCg- -3' miRNA: 3'- -CC-GUgCAGCU-----UGuuGUGGUGGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 39911 | 0.68 | 0.729015 |
Target: 5'- cGGCACGagGAGaccGCGCCACCGuccGCg- -3' miRNA: 3'- -CCGUGCagCUUgu-UGUGGUGGU---CGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 51013 | 0.68 | 0.729015 |
Target: 5'- cGGCGCGUUcGACGcUGCCACCGGg-- -3' miRNA: 3'- -CCGUGCAGcUUGUuGUGGUGGUCgaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 23875 | 0.68 | 0.739698 |
Target: 5'- aGGCACa--GuGCAACAUCACUGGCUUc -3' miRNA: 3'- -CCGUGcagCuUGUUGUGGUGGUCGAA- -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 11660 | 0.68 | 0.739698 |
Target: 5'- --aGCGUCugcuGCAGCGCCACUGGCg- -3' miRNA: 3'- ccgUGCAGcu--UGUUGUGGUGGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 2562 | 0.68 | 0.739698 |
Target: 5'- uGGguUGUCGAuauCGAgGCCACC-GCUg -3' miRNA: 3'- -CCguGCAGCUu--GUUgUGGUGGuCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 52829 | 0.68 | 0.750269 |
Target: 5'- uGGCACcaCGGacggcaGCAACGCCAcguuCCAGCUc -3' miRNA: 3'- -CCGUGcaGCU------UGUUGUGGU----GGUCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 11079 | 0.68 | 0.750269 |
Target: 5'- cGGCGCGcUgGAGCGGCacaucGCCGCCuuGGCa- -3' miRNA: 3'- -CCGUGC-AgCUUGUUG-----UGGUGG--UCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 25446 | 0.68 | 0.750269 |
Target: 5'- uGCACGUgGAGCuGCcguuCgACCAGCUg -3' miRNA: 3'- cCGUGCAgCUUGuUGu---GgUGGUCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 47414 | 0.68 | 0.760716 |
Target: 5'- cGCGCGgaaccCGAuCAACAcgucCCGCCAGCg- -3' miRNA: 3'- cCGUGCa----GCUuGUUGU----GGUGGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 36724 | 0.68 | 0.760716 |
Target: 5'- cGCuCGUCG-ACGACAUCggcaACCGGCUg -3' miRNA: 3'- cCGuGCAGCuUGUUGUGG----UGGUCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 21676 | 0.67 | 0.771028 |
Target: 5'- aGC-UGUCGGGCAACcuGCC-CCGGCUc -3' miRNA: 3'- cCGuGCAGCUUGUUG--UGGuGGUCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 22259 | 0.67 | 0.781193 |
Target: 5'- uGGCGucugUGUUGAcCGugGCGCCACCGGCc- -3' miRNA: 3'- -CCGU----GCAGCUuGU--UGUGGUGGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 39668 | 0.67 | 0.781193 |
Target: 5'- cGCGCGUCGAuC-ACGCCcuugaaGCCAGUg- -3' miRNA: 3'- cCGUGCAGCUuGuUGUGG------UGGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 41303 | 0.67 | 0.781193 |
Target: 5'- uGGCGCcaCGGuCAACACagaCGCCAGCUc -3' miRNA: 3'- -CCGUGcaGCUuGUUGUG---GUGGUCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 50372 | 0.67 | 0.781193 |
Target: 5'- cGGCACGg-GAGCGGagGCCACC-GCUc -3' miRNA: 3'- -CCGUGCagCUUGUUg-UGGUGGuCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 63547 | 0.67 | 0.801034 |
Target: 5'- cGGUG-GUCGAGC--CACCGCCAGUc- -3' miRNA: 3'- -CCGUgCAGCUUGuuGUGGUGGUCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 10602 | 0.67 | 0.801034 |
Target: 5'- aGCugGUCGAu--GCACCACCcucgggAGCc- -3' miRNA: 3'- cCGugCAGCUuguUGUGGUGG------UCGaa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 62753 | 0.67 | 0.801034 |
Target: 5'- gGGCACGga-GGCGGC-CaCACCGGCUg -3' miRNA: 3'- -CCGUGCagcUUGUUGuG-GUGGUCGAa -5' |
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31901 | 5' | -53 | NC_006938.1 | + | 37138 | 0.67 | 0.801034 |
Target: 5'- cGGCGagugccagagauUGUgGAACGagucGCGCCACUAGCg- -3' miRNA: 3'- -CCGU------------GCAgCUUGU----UGUGGUGGUCGaa -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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