Results 21 - 40 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31901 | 5' | -53 | NC_006938.1 | + | 33570 | 0.72 | 0.530589 |
Target: 5'- cGGUuCGUCG-GCAACcgugccGCCACCGGCUc -3' miRNA: 3'- -CCGuGCAGCuUGUUG------UGGUGGUCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 8197 | 0.71 | 0.563225 |
Target: 5'- cGCACGUCGAGC----CgACCAGCUUa -3' miRNA: 3'- cCGUGCAGCUUGuuguGgUGGUCGAA- -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 7307 | 0.71 | 0.584174 |
Target: 5'- aGCugGUCGGACAG-ACCGCCauugucuGGCUUc -3' miRNA: 3'- cCGugCAGCUUGUUgUGGUGG-------UCGAA- -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 32780 | 0.71 | 0.585281 |
Target: 5'- aGGCACaGcCGAACuACAUCGCCcAGCUc -3' miRNA: 3'- -CCGUG-CaGCUUGuUGUGGUGG-UCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 53350 | 0.69 | 0.707364 |
Target: 5'- cGGC-CGUCG-ACAGCAagACCGGCc- -3' miRNA: 3'- -CCGuGCAGCuUGUUGUggUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 51013 | 0.68 | 0.729015 |
Target: 5'- cGGCGCGUUcGACGcUGCCACCGGg-- -3' miRNA: 3'- -CCGUGCAGcUUGUuGUGGUGGUCgaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 23875 | 0.68 | 0.739698 |
Target: 5'- aGGCACa--GuGCAACAUCACUGGCUUc -3' miRNA: 3'- -CCGUGcagCuUGUUGUGGUGGUCGAA- -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 25446 | 0.68 | 0.750269 |
Target: 5'- uGCACGUgGAGCuGCcguuCgACCAGCUg -3' miRNA: 3'- cCGUGCAgCUUGuUGu---GgUGGUCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 39668 | 0.67 | 0.781193 |
Target: 5'- cGCGCGUCGAuC-ACGCCcuugaaGCCAGUg- -3' miRNA: 3'- cCGUGCAGCUuGuUGUGG------UGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 22259 | 0.67 | 0.781193 |
Target: 5'- uGGCGucugUGUUGAcCGugGCGCCACCGGCc- -3' miRNA: 3'- -CCGU----GCAGCUuGU--UGUGGUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 2562 | 0.68 | 0.739698 |
Target: 5'- uGGguUGUCGAuauCGAgGCCACC-GCUg -3' miRNA: 3'- -CCguGCAGCUu--GUUgUGGUGGuCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 11660 | 0.68 | 0.739698 |
Target: 5'- --aGCGUCugcuGCAGCGCCACUGGCg- -3' miRNA: 3'- ccgUGCAGcu--UGUUGUGGUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 56769 | 0.68 | 0.729015 |
Target: 5'- uGGaCAgGUCGGccuugGCcuCGCCGCCAGCg- -3' miRNA: 3'- -CC-GUgCAGCU-----UGuuGUGGUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 10602 | 0.67 | 0.801034 |
Target: 5'- aGCugGUCGAu--GCACCACCcucgggAGCc- -3' miRNA: 3'- cCGugCAGCUuguUGUGGUGG------UCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 63547 | 0.67 | 0.801034 |
Target: 5'- cGGUG-GUCGAGC--CACCGCCAGUc- -3' miRNA: 3'- -CCGUgCAGCUUGuuGUGGUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 47162 | 0.67 | 0.810687 |
Target: 5'- aGCACGUCGAGCu---CgAUCGGCUc -3' miRNA: 3'- cCGUGCAGCUUGuuguGgUGGUCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 51478 | 0.66 | 0.837556 |
Target: 5'- gGGUucuCGUCGGcggugacGCGgauCACUGCCAGCUUg -3' miRNA: 3'- -CCGu--GCAGCU-------UGUu--GUGGUGGUCGAA- -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 11004 | 0.66 | 0.83845 |
Target: 5'- uGGCAgccuugucuCGUCGA---ACGCCAUCAGUUg -3' miRNA: 3'- -CCGU---------GCAGCUuguUGUGGUGGUCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 46052 | 0.66 | 0.864209 |
Target: 5'- cGGCccgcCGUCGAugGCAAaGCCauaGCCAGCg- -3' miRNA: 3'- -CCGu---GCAGCU--UGUUgUGG---UGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 11614 | 0.76 | 0.321579 |
Target: 5'- cGGCAgaUCGGGCGGCACCGCCgAGCc- -3' miRNA: 3'- -CCGUgcAGCUUGUUGUGGUGG-UCGaa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home