miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31901 5' -53 NC_006938.1 + 62753 0.67 0.801034
Target:  5'- gGGCACGga-GGCGGC-CaCACCGGCUg -3'
miRNA:   3'- -CCGUGCagcUUGUUGuG-GUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 25446 0.68 0.750269
Target:  5'- uGCACGUgGAGCuGCcguuCgACCAGCUg -3'
miRNA:   3'- cCGUGCAgCUUGuUGu---GgUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 52829 0.68 0.750269
Target:  5'- uGGCACcaCGGacggcaGCAACGCCAcguuCCAGCUc -3'
miRNA:   3'- -CCGUGcaGCU------UGUUGUGGU----GGUCGAa -5'
31901 5' -53 NC_006938.1 + 11079 0.68 0.750269
Target:  5'- cGGCGCGcUgGAGCGGCacaucGCCGCCuuGGCa- -3'
miRNA:   3'- -CCGUGC-AgCUUGUUG-----UGGUGG--UCGaa -5'
31901 5' -53 NC_006938.1 + 36724 0.68 0.760716
Target:  5'- cGCuCGUCG-ACGACAUCggcaACCGGCUg -3'
miRNA:   3'- cCGuGCAGCuUGUUGUGG----UGGUCGAa -5'
31901 5' -53 NC_006938.1 + 47414 0.68 0.760716
Target:  5'- cGCGCGgaaccCGAuCAACAcgucCCGCCAGCg- -3'
miRNA:   3'- cCGUGCa----GCUuGUUGU----GGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 21676 0.67 0.771028
Target:  5'- aGC-UGUCGGGCAACcuGCC-CCGGCUc -3'
miRNA:   3'- cCGuGCAGCUUGUUG--UGGuGGUCGAa -5'
31901 5' -53 NC_006938.1 + 41303 0.67 0.781193
Target:  5'- uGGCGCcaCGGuCAACACagaCGCCAGCUc -3'
miRNA:   3'- -CCGUGcaGCUuGUUGUG---GUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 50372 0.67 0.781193
Target:  5'- cGGCACGg-GAGCGGagGCCACC-GCUc -3'
miRNA:   3'- -CCGUGCagCUUGUUg-UGGUGGuCGAa -5'
31901 5' -53 NC_006938.1 + 23875 0.68 0.739698
Target:  5'- aGGCACa--GuGCAACAUCACUGGCUUc -3'
miRNA:   3'- -CCGUGcagCuUGUUGUGGUGGUCGAA- -5'
31901 5' -53 NC_006938.1 + 51013 0.68 0.729015
Target:  5'- cGGCGCGUUcGACGcUGCCACCGGg-- -3'
miRNA:   3'- -CCGUGCAGcUUGUuGUGGUGGUCgaa -5'
31901 5' -53 NC_006938.1 + 53350 0.69 0.707364
Target:  5'- cGGC-CGUCG-ACAGCAagACCGGCc- -3'
miRNA:   3'- -CCGuGCAGCuUGUUGUggUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 39021 0.73 0.46763
Target:  5'- uGGCAUGcCGAAUGGCACUGCC-GCUg -3'
miRNA:   3'- -CCGUGCaGCUUGUUGUGGUGGuCGAa -5'
31901 5' -53 NC_006938.1 + 8237 0.73 0.477868
Target:  5'- -aCGCGUCGAGCGGCGaauaagaggauCCGCCAGUUc -3'
miRNA:   3'- ccGUGCAGCUUGUUGU-----------GGUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 1894 0.72 0.489256
Target:  5'- cGGCGCGcuaUGAGCcggcaaaguucaacuACACCACCGGCUg -3'
miRNA:   3'- -CCGUGCa--GCUUGu--------------UGUGGUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 26726 0.72 0.51986
Target:  5'- uGGCuACGUCG-GCAuCGCCAgCCAGCa- -3'
miRNA:   3'- -CCG-UGCAGCuUGUuGUGGU-GGUCGaa -5'
31901 5' -53 NC_006938.1 + 33570 0.72 0.530589
Target:  5'- cGGUuCGUCG-GCAACcgugccGCCACCGGCUc -3'
miRNA:   3'- -CCGuGCAGCuUGUUG------UGGUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 8197 0.71 0.563225
Target:  5'- cGCACGUCGAGC----CgACCAGCUUa -3'
miRNA:   3'- cCGUGCAGCUUGuuguGgUGGUCGAA- -5'
31901 5' -53 NC_006938.1 + 7307 0.71 0.584174
Target:  5'- aGCugGUCGGACAG-ACCGCCauugucuGGCUUc -3'
miRNA:   3'- cCGugCAGCUUGUUgUGGUGG-------UCGAA- -5'
31901 5' -53 NC_006938.1 + 32780 0.71 0.585281
Target:  5'- aGGCACaGcCGAACuACAUCGCCcAGCUc -3'
miRNA:   3'- -CCGUG-CaGCUUGuUGUGGUGG-UCGAa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.