miRNA display CGI


Results 1 - 20 of 51 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31901 5' -53 NC_006938.1 + 47822 0.66 0.864209
Target:  5'- uGGCGCGacccCGGACGcggACAUCAgCGGCa- -3'
miRNA:   3'- -CCGUGCa---GCUUGU---UGUGGUgGUCGaa -5'
31901 5' -53 NC_006938.1 + 12555 0.7 0.64096
Target:  5'- uGGCAgCGUCGAACG-CGCCgacuGCCuGCa- -3'
miRNA:   3'- -CCGU-GCAGCUUGUuGUGG----UGGuCGaa -5'
31901 5' -53 NC_006938.1 + 61421 0.71 0.585281
Target:  5'- uGCACGUCGccccaguuGACGGCuGCCACCuGCg- -3'
miRNA:   3'- cCGUGCAGC--------UUGUUG-UGGUGGuCGaa -5'
31901 5' -53 NC_006938.1 + 11614 0.76 0.321579
Target:  5'- cGGCAgaUCGGGCGGCACCGCCgAGCc- -3'
miRNA:   3'- -CCGUgcAGCUUGUUGUGGUGG-UCGaa -5'
31901 5' -53 NC_006938.1 + 47162 0.67 0.810687
Target:  5'- aGCACGUCGAGCu---CgAUCGGCUc -3'
miRNA:   3'- cCGUGCAGCUUGuuguGgUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 63547 0.67 0.801034
Target:  5'- cGGUG-GUCGAGC--CACCGCCAGUc- -3'
miRNA:   3'- -CCGUgCAGCUUGuuGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 39668 0.67 0.781193
Target:  5'- cGCGCGUCGAuC-ACGCCcuugaaGCCAGUg- -3'
miRNA:   3'- cCGUGCAGCUuGuUGUGG------UGGUCGaa -5'
31901 5' -53 NC_006938.1 + 22259 0.67 0.781193
Target:  5'- uGGCGucugUGUUGAcCGugGCGCCACCGGCc- -3'
miRNA:   3'- -CCGU----GCAGCUuGU--UGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 56769 0.68 0.729015
Target:  5'- uGGaCAgGUCGGccuugGCcuCGCCGCCAGCg- -3'
miRNA:   3'- -CC-GUgCAGCU-----UGuuGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 12269 0.7 0.64096
Target:  5'- uGCACGgucguggCGAGCuggcggaacGCGCCACCGGCc- -3'
miRNA:   3'- cCGUGCa------GCUUGu--------UGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 61514 0.69 0.696418
Target:  5'- cGGCcccucgcgucaGCGUUGAGCugccuGAC-CCACCAGCg- -3'
miRNA:   3'- -CCG-----------UGCAGCUUG-----UUGuGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 11660 0.68 0.739698
Target:  5'- --aGCGUCugcuGCAGCGCCACUGGCg- -3'
miRNA:   3'- ccgUGCAGcu--UGUUGUGGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 46052 0.66 0.864209
Target:  5'- cGGCccgcCGUCGAugGCAAaGCCauaGCCAGCg- -3'
miRNA:   3'- -CCGu---GCAGCU--UGUUgUGG---UGGUCGaa -5'
31901 5' -53 NC_006938.1 + 39859 0.69 0.674347
Target:  5'- gGGCGCGcUCGAGCAucucggccAUGCCGCCcuGGCc- -3'
miRNA:   3'- -CCGUGC-AGCUUGU--------UGUGGUGG--UCGaa -5'
31901 5' -53 NC_006938.1 + 11004 0.66 0.83845
Target:  5'- uGGCAgccuugucuCGUCGA---ACGCCAUCAGUUg -3'
miRNA:   3'- -CCGU---------GCAGCUuguUGUGGUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 2562 0.68 0.739698
Target:  5'- uGGguUGUCGAuauCGAgGCCACC-GCUg -3'
miRNA:   3'- -CCguGCAGCUu--GUUgUGGUGGuCGAa -5'
31901 5' -53 NC_006938.1 + 61973 0.7 0.652112
Target:  5'- uGUACGU-GAAUcggGACACCAUCAGCUc -3'
miRNA:   3'- cCGUGCAgCUUG---UUGUGGUGGUCGAa -5'
31901 5' -53 NC_006938.1 + 48191 0.7 0.607497
Target:  5'- uGGUcgaaGUCGAAgAACGuCCGCCAGCg- -3'
miRNA:   3'- -CCGug--CAGCUUgUUGU-GGUGGUCGaa -5'
31901 5' -53 NC_006938.1 + 51478 0.66 0.837556
Target:  5'- gGGUucuCGUCGGcggugacGCGgauCACUGCCAGCUUg -3'
miRNA:   3'- -CCGu--GCAGCU-------UGUu--GUGGUGGUCGAA- -5'
31901 5' -53 NC_006938.1 + 10602 0.67 0.801034
Target:  5'- aGCugGUCGAu--GCACCACCcucgggAGCc- -3'
miRNA:   3'- cCGugCAGCUuguUGUGGUGG------UCGaa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.