Results 1 - 20 of 51 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31901 | 5' | -53 | NC_006938.1 | + | 63547 | 0.67 | 0.801034 |
Target: 5'- cGGUG-GUCGAGC--CACCGCCAGUc- -3' miRNA: 3'- -CCGUgCAGCUUGuuGUGGUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 63513 | 0.66 | 0.828489 |
Target: 5'- cGCACGUucaaggaCGGACcGCACUGgCAGCUg -3' miRNA: 3'- cCGUGCA-------GCUUGuUGUGGUgGUCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 62753 | 0.67 | 0.801034 |
Target: 5'- gGGCACGga-GGCGGC-CaCACCGGCUg -3' miRNA: 3'- -CCGUGCagcUUGUUGuG-GUGGUCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 61973 | 0.7 | 0.652112 |
Target: 5'- uGUACGU-GAAUcggGACACCAUCAGCUc -3' miRNA: 3'- cCGUGCAgCUUG---UUGUGGUGGUCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 61514 | 0.69 | 0.696418 |
Target: 5'- cGGCcccucgcgucaGCGUUGAGCugccuGAC-CCACCAGCg- -3' miRNA: 3'- -CCG-----------UGCAGCUUG-----UUGuGGUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 61421 | 0.71 | 0.585281 |
Target: 5'- uGCACGUCGccccaguuGACGGCuGCCACCuGCg- -3' miRNA: 3'- cCGUGCAGC--------UUGUUG-UGGUGGuCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 57464 | 0.67 | 0.810687 |
Target: 5'- uGG-ACGUCGAcCAGgACUAUCAGCa- -3' miRNA: 3'- -CCgUGCAGCUuGUUgUGGUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 56769 | 0.68 | 0.729015 |
Target: 5'- uGGaCAgGUCGGccuugGCcuCGCCGCCAGCg- -3' miRNA: 3'- -CC-GUgCAGCU-----UGuuGUGGUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 56323 | 1.07 | 0.002518 |
Target: 5'- uGGCACGUCGAACAACACCACCAGCUUc -3' miRNA: 3'- -CCGUGCAGCUUGUUGUGGUGGUCGAA- -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 53350 | 0.69 | 0.707364 |
Target: 5'- cGGC-CGUCG-ACAGCAagACCGGCc- -3' miRNA: 3'- -CCGuGCAGCuUGUUGUggUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 52829 | 0.68 | 0.750269 |
Target: 5'- uGGCACcaCGGacggcaGCAACGCCAcguuCCAGCUc -3' miRNA: 3'- -CCGUGcaGCU------UGUUGUGGU----GGUCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 51478 | 0.66 | 0.837556 |
Target: 5'- gGGUucuCGUCGGcggugacGCGgauCACUGCCAGCUUg -3' miRNA: 3'- -CCGu--GCAGCU-------UGUu--GUGGUGGUCGAA- -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 51013 | 0.68 | 0.729015 |
Target: 5'- cGGCGCGUUcGACGcUGCCACCGGg-- -3' miRNA: 3'- -CCGUGCAGcUUGUuGUGGUGGUCgaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 50372 | 0.67 | 0.781193 |
Target: 5'- cGGCACGg-GAGCGGagGCCACC-GCUc -3' miRNA: 3'- -CCGUGCagCUUGUUg-UGGUGGuCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 48191 | 0.7 | 0.607497 |
Target: 5'- uGGUcgaaGUCGAAgAACGuCCGCCAGCg- -3' miRNA: 3'- -CCGug--CAGCUUgUUGU-GGUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 47822 | 0.66 | 0.864209 |
Target: 5'- uGGCGCGacccCGGACGcggACAUCAgCGGCa- -3' miRNA: 3'- -CCGUGCa---GCUUGU---UGUGGUgGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 47414 | 0.68 | 0.760716 |
Target: 5'- cGCGCGgaaccCGAuCAACAcgucCCGCCAGCg- -3' miRNA: 3'- cCGUGCa----GCUuGUUGU----GGUGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 47162 | 0.67 | 0.810687 |
Target: 5'- aGCACGUCGAGCu---CgAUCGGCUc -3' miRNA: 3'- cCGUGCAGCUUGuuguGgUGGUCGAa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 46052 | 0.66 | 0.864209 |
Target: 5'- cGGCccgcCGUCGAugGCAAaGCCauaGCCAGCg- -3' miRNA: 3'- -CCGu---GCAGCU--UGUUgUGG---UGGUCGaa -5' |
|||||||
31901 | 5' | -53 | NC_006938.1 | + | 41303 | 0.67 | 0.781193 |
Target: 5'- uGGCGCcaCGGuCAACACagaCGCCAGCUc -3' miRNA: 3'- -CCGUGcaGCUuGUUGUG---GUGGUCGAa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home