Results 41 - 60 of 79 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31905 | 3' | -49.8 | NC_006938.1 | + | 29543 | 0.68 | 0.913346 |
Target: 5'- aGAGGCCGUCGACGcgggugucCGCGAGgGCc- -3' miRNA: 3'- cUUCUGGUAGCUGUu-------GUGCUUgCGcc -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 12257 | 0.68 | 0.913346 |
Target: 5'- -uGGACCA-CGGCcuGCACGGuCGUGGc -3' miRNA: 3'- cuUCUGGUaGCUGu-UGUGCUuGCGCC- -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 53886 | 0.69 | 0.906766 |
Target: 5'- -uGGcCCGUCGACAACGuuguccauGGCGCGGa -3' miRNA: 3'- cuUCuGGUAGCUGUUGUgc------UUGCGCC- -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 13446 | 0.69 | 0.906766 |
Target: 5'- cGAAGgugcgaaugacACCcUCGGCGGCgACGAuCGCGGc -3' miRNA: 3'- -CUUC-----------UGGuAGCUGUUG-UGCUuGCGCC- -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 23106 | 0.69 | 0.906766 |
Target: 5'- gGAGGAgUGUCGucccCGACACGGacaaaguccgGCGCGGc -3' miRNA: 3'- -CUUCUgGUAGCu---GUUGUGCU----------UGCGCC- -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 28657 | 0.69 | 0.899906 |
Target: 5'- -uGGACCAggUCGGcCGGgGCGAACGUGu -3' miRNA: 3'- cuUCUGGU--AGCU-GUUgUGCUUGCGCc -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 34113 | 0.69 | 0.892768 |
Target: 5'- cGAGGCCAUCauCAACugGGACaaGGg -3' miRNA: 3'- cUUCUGGUAGcuGUUGugCUUGcgCC- -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 49484 | 0.69 | 0.892768 |
Target: 5'- ---cGCCGUCGACGACACcGucuuCGCGa -3' miRNA: 3'- cuucUGGUAGCUGUUGUG-Cuu--GCGCc -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 48111 | 0.69 | 0.892768 |
Target: 5'- cGAGGCCAgCGGCccacaucuGCACGAcgACGCGa -3' miRNA: 3'- cUUCUGGUaGCUGu-------UGUGCU--UGCGCc -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 21644 | 0.69 | 0.885359 |
Target: 5'- --uGACCAgggCGACGugGgcCGcGCGCGGg -3' miRNA: 3'- cuuCUGGUa--GCUGUugU--GCuUGCGCC- -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 33533 | 0.69 | 0.885359 |
Target: 5'- uGAAGACCAcgUCGGCGACGagaccaGAuacCGCGu -3' miRNA: 3'- -CUUCUGGU--AGCUGUUGUg-----CUu--GCGCc -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 28975 | 0.69 | 0.885359 |
Target: 5'- cGgcGuCCGUCGGCAGguCGAGC-CGGg -3' miRNA: 3'- -CuuCuGGUAGCUGUUguGCUUGcGCC- -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 40548 | 0.69 | 0.877682 |
Target: 5'- cGAGuCCAUUGACGAUcugACGGACGaGGa -3' miRNA: 3'- cUUCuGGUAGCUGUUG---UGCUUGCgCC- -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 38662 | 0.69 | 0.877682 |
Target: 5'- uGAGGAucccgcugacuCCAUCG-CGACACGGGuCGCGu -3' miRNA: 3'- -CUUCU-----------GGUAGCuGUUGUGCUU-GCGCc -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 28871 | 0.7 | 0.869744 |
Target: 5'- --cGugCAgaUCGACGACcCGGacuGCGCGGa -3' miRNA: 3'- cuuCugGU--AGCUGUUGuGCU---UGCGCC- -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 18903 | 0.7 | 0.869744 |
Target: 5'- aAGGACCG--GGCcAC-CGAGCGCGGg -3' miRNA: 3'- cUUCUGGUagCUGuUGuGCUUGCGCC- -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 14796 | 0.7 | 0.861552 |
Target: 5'- --cGACCAUCGccCAGgGCGAugaGCGGg -3' miRNA: 3'- cuuCUGGUAGCu-GUUgUGCUug-CGCC- -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 17559 | 0.7 | 0.861552 |
Target: 5'- uGAGAaCggCGACAACcUGGACGCGGc -3' miRNA: 3'- cUUCUgGuaGCUGUUGuGCUUGCGCC- -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 22283 | 0.7 | 0.860719 |
Target: 5'- -cAGGCCGUCGcCGGgagcgcuCACGAGCGCuGGc -3' miRNA: 3'- cuUCUGGUAGCuGUU-------GUGCUUGCG-CC- -5' |
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31905 | 3' | -49.8 | NC_006938.1 | + | 54158 | 0.7 | 0.853113 |
Target: 5'- -uGGGCCAUUGACAcCugGuaccACGUGGc -3' miRNA: 3'- cuUCUGGUAGCUGUuGugCu---UGCGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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