miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31905 3' -49.8 NC_006938.1 + 5768 0.67 0.959845
Target:  5'- --uGGCCGUCGACGA---GAACGUGa -3'
miRNA:   3'- cuuCUGGUAGCUGUUgugCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 3325 0.67 0.959845
Target:  5'- cAGGGCac-CGGCAAgAUGAAgGCGGg -3'
miRNA:   3'- cUUCUGguaGCUGUUgUGCUUgCGCC- -5'
31905 3' -49.8 NC_006938.1 + 57180 0.67 0.959845
Target:  5'- -cAGACUgAUCGcCuucuGgACGAACGCGGa -3'
miRNA:   3'- cuUCUGG-UAGCuGu---UgUGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 56421 0.67 0.955789
Target:  5'- aGAAGGCgCAguUCGACGACcuugggcuccuCGA-CGCGGa -3'
miRNA:   3'- -CUUCUG-GU--AGCUGUUGu----------GCUuGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 29985 0.67 0.953227
Target:  5'- uGAG-CCggUGGCGGCACGGuugccgacgaaccggACGCGGu -3'
miRNA:   3'- cUUCuGGuaGCUGUUGUGCU---------------UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 56360 0.67 0.951464
Target:  5'- -cAGGCCcugCGccugguCAACGCGGACGCGc -3'
miRNA:   3'- cuUCUGGua-GCu-----GUUGUGCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 34970 0.67 0.951464
Target:  5'- cGAGACCAUCcACAuguggcuccagaACAUGGACGUcacGGa -3'
miRNA:   3'- cUUCUGGUAGcUGU------------UGUGCUUGCG---CC- -5'
31905 3' -49.8 NC_006938.1 + 39572 0.67 0.946865
Target:  5'- --cGGCCGUCGACuuCuCGGACGaCGu -3'
miRNA:   3'- cuuCUGGUAGCUGuuGuGCUUGC-GCc -5'
31905 3' -49.8 NC_006938.1 + 24030 0.67 0.946865
Target:  5'- aGAAGGCCAagGuCAAgggcCACGAGC-CGGa -3'
miRNA:   3'- -CUUCUGGUagCuGUU----GUGCUUGcGCC- -5'
31905 3' -49.8 NC_006938.1 + 28898 0.67 0.941987
Target:  5'- nGAGGACUGgaagUGaACAacuuGCACGAGCGcCGGa -3'
miRNA:   3'- -CUUCUGGUa---GC-UGU----UGUGCUUGC-GCC- -5'
31905 3' -49.8 NC_006938.1 + 41891 0.67 0.941987
Target:  5'- cGGGGCagguugccCGACAGCugGAccgcGCGCGGc -3'
miRNA:   3'- cUUCUGgua-----GCUGUUGugCU----UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 19965 0.67 0.941987
Target:  5'- gGAGGACCGUCccacGAaguACAUGuACGUGGu -3'
miRNA:   3'- -CUUCUGGUAG----CUgu-UGUGCuUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 38446 0.67 0.941987
Target:  5'- --cGACC-UCGACAACGacgaagaGAACGUGu -3'
miRNA:   3'- cuuCUGGuAGCUGUUGUg------CUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 28206 0.68 0.936828
Target:  5'- -cAGACgA-CGAgAGCGCG-GCGCGGa -3'
miRNA:   3'- cuUCUGgUaGCUgUUGUGCuUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 59221 0.68 0.936828
Target:  5'- ---uGCCuUCG-CAGCucgGCGAGCGCGGu -3'
miRNA:   3'- cuucUGGuAGCuGUUG---UGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 23241 0.68 0.925657
Target:  5'- -cGGACCcuucgagugGUCGGCGAC-CGAG-GCGGa -3'
miRNA:   3'- cuUCUGG---------UAGCUGUUGuGCUUgCGCC- -5'
31905 3' -49.8 NC_006938.1 + 56975 0.68 0.925657
Target:  5'- --cGcCCGUUGACAuaACGAACGCuGGg -3'
miRNA:   3'- cuuCuGGUAGCUGUugUGCUUGCG-CC- -5'
31905 3' -49.8 NC_006938.1 + 40679 0.68 0.919644
Target:  5'- aGAAuGCCAUCGAgaacaagauCAGCACGcuggcccgccGCGCGGa -3'
miRNA:   3'- -CUUcUGGUAGCU---------GUUGUGCu---------UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 48031 0.68 0.913346
Target:  5'- cAAGACC-UCgGGCGGCGCGGACgGCa- -3'
miRNA:   3'- cUUCUGGuAG-CUGUUGUGCUUG-CGcc -5'
31905 3' -49.8 NC_006938.1 + 51788 0.68 0.913346
Target:  5'- -cAGACCAUCGAggcgacCAAC-CGGcuGCGCGa -3'
miRNA:   3'- cuUCUGGUAGCU------GUUGuGCU--UGCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.