miRNA display CGI


Results 21 - 40 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31905 3' -49.8 NC_006938.1 + 22283 0.7 0.860719
Target:  5'- -cAGGCCGUCGcCGGgagcgcuCACGAGCGCuGGc -3'
miRNA:   3'- cuUCUGGUAGCuGUU-------GUGCUUGCG-CC- -5'
31905 3' -49.8 NC_006938.1 + 14796 0.7 0.861552
Target:  5'- --cGACCAUCGccCAGgGCGAugaGCGGg -3'
miRNA:   3'- cuuCUGGUAGCu-GUUgUGCUug-CGCC- -5'
31905 3' -49.8 NC_006938.1 + 17559 0.7 0.861552
Target:  5'- uGAGAaCggCGACAACcUGGACGCGGc -3'
miRNA:   3'- cUUCUgGuaGCUGUUGuGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 18903 0.7 0.869744
Target:  5'- aAGGACCG--GGCcAC-CGAGCGCGGg -3'
miRNA:   3'- cUUCUGGUagCUGuUGuGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 28871 0.7 0.869744
Target:  5'- --cGugCAgaUCGACGACcCGGacuGCGCGGa -3'
miRNA:   3'- cuuCugGU--AGCUGUUGuGCU---UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 40548 0.69 0.877682
Target:  5'- cGAGuCCAUUGACGAUcugACGGACGaGGa -3'
miRNA:   3'- cUUCuGGUAGCUGUUG---UGCUUGCgCC- -5'
31905 3' -49.8 NC_006938.1 + 38662 0.69 0.877682
Target:  5'- uGAGGAucccgcugacuCCAUCG-CGACACGGGuCGCGu -3'
miRNA:   3'- -CUUCU-----------GGUAGCuGUUGUGCUU-GCGCc -5'
31905 3' -49.8 NC_006938.1 + 28975 0.69 0.885359
Target:  5'- cGgcGuCCGUCGGCAGguCGAGC-CGGg -3'
miRNA:   3'- -CuuCuGGUAGCUGUUguGCUUGcGCC- -5'
31905 3' -49.8 NC_006938.1 + 21644 0.69 0.885359
Target:  5'- --uGACCAgggCGACGugGgcCGcGCGCGGg -3'
miRNA:   3'- cuuCUGGUa--GCUGUugU--GCuUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 33533 0.69 0.885359
Target:  5'- uGAAGACCAcgUCGGCGACGagaccaGAuacCGCGu -3'
miRNA:   3'- -CUUCUGGU--AGCUGUUGUg-----CUu--GCGCc -5'
31905 3' -49.8 NC_006938.1 + 49484 0.69 0.892768
Target:  5'- ---cGCCGUCGACGACACcGucuuCGCGa -3'
miRNA:   3'- cuucUGGUAGCUGUUGUG-Cuu--GCGCc -5'
31905 3' -49.8 NC_006938.1 + 34113 0.69 0.892768
Target:  5'- cGAGGCCAUCauCAACugGGACaaGGg -3'
miRNA:   3'- cUUCUGGUAGcuGUUGugCUUGcgCC- -5'
31905 3' -49.8 NC_006938.1 + 48111 0.69 0.892768
Target:  5'- cGAGGCCAgCGGCccacaucuGCACGAcgACGCGa -3'
miRNA:   3'- cUUCUGGUaGCUGu-------UGUGCU--UGCGCc -5'
31905 3' -49.8 NC_006938.1 + 28657 0.69 0.899906
Target:  5'- -uGGACCAggUCGGcCGGgGCGAACGUGu -3'
miRNA:   3'- cuUCUGGU--AGCU-GUUgUGCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 23106 0.69 0.906766
Target:  5'- gGAGGAgUGUCGucccCGACACGGacaaaguccgGCGCGGc -3'
miRNA:   3'- -CUUCUgGUAGCu---GUUGUGCU----------UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 13446 0.69 0.906766
Target:  5'- cGAAGgugcgaaugacACCcUCGGCGGCgACGAuCGCGGc -3'
miRNA:   3'- -CUUC-----------UGGuAGCUGUUG-UGCUuGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 53886 0.69 0.906766
Target:  5'- -uGGcCCGUCGACAACGuuguccauGGCGCGGa -3'
miRNA:   3'- cuUCuGGUAGCUGUUGUgc------UUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 48031 0.68 0.913346
Target:  5'- cAAGACC-UCgGGCGGCGCGGACgGCa- -3'
miRNA:   3'- cUUCUGGuAG-CUGUUGUGCUUG-CGcc -5'
31905 3' -49.8 NC_006938.1 + 51788 0.68 0.913346
Target:  5'- -cAGACCAUCGAggcgacCAAC-CGGcuGCGCGa -3'
miRNA:   3'- cuUCUGGUAGCU------GUUGuGCU--UGCGCc -5'
31905 3' -49.8 NC_006938.1 + 12257 0.68 0.913346
Target:  5'- -uGGACCA-CGGCcuGCACGGuCGUGGc -3'
miRNA:   3'- cuUCUGGUaGCUGu-UGUGCUuGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.