miRNA display CGI


Results 21 - 40 of 79 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31905 3' -49.8 NC_006938.1 + 21644 0.69 0.885359
Target:  5'- --uGACCAgggCGACGugGgcCGcGCGCGGg -3'
miRNA:   3'- cuuCUGGUa--GCUGUugU--GCuUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 22283 0.7 0.860719
Target:  5'- -cAGGCCGUCGcCGGgagcgcuCACGAGCGCuGGc -3'
miRNA:   3'- cuUCUGGUAGCuGUU-------GUGCUUGCG-CC- -5'
31905 3' -49.8 NC_006938.1 + 23106 0.69 0.906766
Target:  5'- gGAGGAgUGUCGucccCGACACGGacaaaguccgGCGCGGc -3'
miRNA:   3'- -CUUCUgGUAGCu---GUUGUGCU----------UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 23241 0.68 0.925657
Target:  5'- -cGGACCcuucgagugGUCGGCGAC-CGAG-GCGGa -3'
miRNA:   3'- cuUCUGG---------UAGCUGUUGuGCUUgCGCC- -5'
31905 3' -49.8 NC_006938.1 + 23535 0.66 0.96717
Target:  5'- -cAGGCCAcUUGGCAAUGCGAuCGUGc -3'
miRNA:   3'- cuUCUGGU-AGCUGUUGUGCUuGCGCc -5'
31905 3' -49.8 NC_006938.1 + 24030 0.67 0.946865
Target:  5'- aGAAGGCCAagGuCAAgggcCACGAGC-CGGa -3'
miRNA:   3'- -CUUCUGGUagCuGUU----GUGCUUGcGCC- -5'
31905 3' -49.8 NC_006938.1 + 24312 0.66 0.966483
Target:  5'- cGAGGugC-UCGACGGCcgcauccuggaGGACGUGGa -3'
miRNA:   3'- -CUUCugGuAGCUGUUGug---------CUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 25064 0.66 0.963268
Target:  5'- aGAcGACCA-CGGCAACugGGucaagucAgGCGGc -3'
miRNA:   3'- -CUuCUGGUaGCUGUUGugCU-------UgCGCC- -5'
31905 3' -49.8 NC_006938.1 + 26065 0.66 0.96717
Target:  5'- --cGGCUgcgUGGCAGCugGucGCGCGGa -3'
miRNA:   3'- cuuCUGGua-GCUGUUGugCu-UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 28206 0.68 0.936828
Target:  5'- -cAGACgA-CGAgAGCGCG-GCGCGGa -3'
miRNA:   3'- cuUCUGgUaGCUgUUGUGCuUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 28646 0.66 0.976304
Target:  5'- --cGACCA-CGACAcgugGCugGAGCuccgucGCGGc -3'
miRNA:   3'- cuuCUGGUaGCUGU----UGugCUUG------CGCC- -5'
31905 3' -49.8 NC_006938.1 + 28657 0.69 0.899906
Target:  5'- -uGGACCAggUCGGcCGGgGCGAACGUGu -3'
miRNA:   3'- cuUCUGGU--AGCU-GUUgUGCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 28871 0.7 0.869744
Target:  5'- --cGugCAgaUCGACGACcCGGacuGCGCGGa -3'
miRNA:   3'- cuuCugGU--AGCUGUUGuGCU---UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 28898 0.67 0.941987
Target:  5'- nGAGGACUGgaagUGaACAacuuGCACGAGCGcCGGa -3'
miRNA:   3'- -CUUCUGGUa---GC-UGU----UGUGCUUGC-GCC- -5'
31905 3' -49.8 NC_006938.1 + 28975 0.69 0.885359
Target:  5'- cGgcGuCCGUCGGCAGguCGAGC-CGGg -3'
miRNA:   3'- -CuuCuGGUAGCUGUUguGCUUGcGCC- -5'
31905 3' -49.8 NC_006938.1 + 29543 0.68 0.913346
Target:  5'- aGAGGCCGUCGACGcgggugucCGCGAGgGCc- -3'
miRNA:   3'- cUUCUGGUAGCUGUu-------GUGCUUgCGcc -5'
31905 3' -49.8 NC_006938.1 + 29985 0.67 0.953227
Target:  5'- uGAG-CCggUGGCGGCACGGuugccgacgaaccggACGCGGu -3'
miRNA:   3'- cUUCuGGuaGCUGUUGUGCU---------------UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 30076 0.77 0.483296
Target:  5'- uGggGAcCCGUCGGCGGCAUGggUcgguucgGCGGa -3'
miRNA:   3'- -CuuCU-GGUAGCUGUUGUGCuuG-------CGCC- -5'
31905 3' -49.8 NC_006938.1 + 30618 0.81 0.310531
Target:  5'- aGGAGGUCGUCGGgAGCACGAACGCGc -3'
miRNA:   3'- -CUUCUGGUAGCUgUUGUGCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 32112 0.66 0.976304
Target:  5'- ---cGCCAUCGGaGGCAgGAAgGUGGg -3'
miRNA:   3'- cuucUGGUAGCUgUUGUgCUUgCGCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.