miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31905 3' -49.8 NC_006938.1 + 3325 0.67 0.959845
Target:  5'- cAGGGCac-CGGCAAgAUGAAgGCGGg -3'
miRNA:   3'- cUUCUGguaGCUGUUgUGCUUgCGCC- -5'
31905 3' -49.8 NC_006938.1 + 4549 0.66 0.96717
Target:  5'- gGAGGcACCGUCGuCGGCcACGAggauugaggcaGCGCGc -3'
miRNA:   3'- -CUUC-UGGUAGCuGUUG-UGCU-----------UGCGCc -5'
31905 3' -49.8 NC_006938.1 + 5188 0.81 0.310531
Target:  5'- -uGGGCCAgCGGCAGCAgGAACGCGa -3'
miRNA:   3'- cuUCUGGUaGCUGUUGUgCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 5768 0.67 0.959845
Target:  5'- --uGGCCGUCGACGA---GAACGUGa -3'
miRNA:   3'- cuuCUGGUAGCUGUUgugCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 6582 0.66 0.96717
Target:  5'- -cAGACCGUCG-CugucaACGGACGCa- -3'
miRNA:   3'- cuUCUGGUAGCuGuug--UGCUUGCGcc -5'
31905 3' -49.8 NC_006938.1 + 8456 0.71 0.817059
Target:  5'- gGAAGGauCCAUCaGGuCGGCGCGGauACGCGGu -3'
miRNA:   3'- -CUUCU--GGUAG-CU-GUUGUGCU--UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 11506 0.66 0.96717
Target:  5'- cGAAGu---UgGACAGCGCGGacgACGCGGc -3'
miRNA:   3'- -CUUCugguAgCUGUUGUGCU---UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 12172 0.66 0.966828
Target:  5'- --cGGCCAcacgcucUCGAacuGCugGAGCgGCGGg -3'
miRNA:   3'- cuuCUGGU-------AGCUgu-UGugCUUG-CGCC- -5'
31905 3' -49.8 NC_006938.1 + 12257 0.68 0.913346
Target:  5'- -uGGACCA-CGGCcuGCACGGuCGUGGc -3'
miRNA:   3'- cuUCUGGUaGCUGu-UGUGCUuGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 12543 0.75 0.570235
Target:  5'- cGGAGGCCccggUGGCAGCGuCGAACGCGc -3'
miRNA:   3'- -CUUCUGGua--GCUGUUGU-GCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 13446 0.69 0.906766
Target:  5'- cGAAGgugcgaaugacACCcUCGGCGGCgACGAuCGCGGc -3'
miRNA:   3'- -CUUC-----------UGGuAGCUGUUG-UGCUuGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 14796 0.7 0.861552
Target:  5'- --cGACCAUCGccCAGgGCGAugaGCGGg -3'
miRNA:   3'- cuuCUGGUAGCu-GUUgUGCUug-CGCC- -5'
31905 3' -49.8 NC_006938.1 + 16966 0.8 0.334567
Target:  5'- -cGGACCuccucGUCGGCAGCugGGgaGCGCGGg -3'
miRNA:   3'- cuUCUGG-----UAGCUGUUGugCU--UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 17559 0.7 0.861552
Target:  5'- uGAGAaCggCGACAACcUGGACGCGGc -3'
miRNA:   3'- cUUCUgGuaGCUGUUGuGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 17729 0.66 0.96717
Target:  5'- cAAGAcaaccgucucuCCAUCGGCGggcuGCGCGGagaACGUGGc -3'
miRNA:   3'- cUUCU-----------GGUAGCUGU----UGUGCU---UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 18903 0.7 0.869744
Target:  5'- aAGGACCG--GGCcAC-CGAGCGCGGg -3'
miRNA:   3'- cUUCUGGUagCUGuUGuGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 19318 0.73 0.681568
Target:  5'- cGGAGGCCGgaggUGGCAcgguucuuCAUGGACGCGGc -3'
miRNA:   3'- -CUUCUGGUa---GCUGUu-------GUGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 19848 0.71 0.80752
Target:  5'- uGAAGuCCAagGACcccAGCACGAAgGUGGg -3'
miRNA:   3'- -CUUCuGGUagCUG---UUGUGCUUgCGCC- -5'
31905 3' -49.8 NC_006938.1 + 19965 0.67 0.941987
Target:  5'- gGAGGACCGUCccacGAaguACAUGuACGUGGu -3'
miRNA:   3'- -CUUCUGGUAG----CUgu-UGUGCuUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 21266 0.66 0.96717
Target:  5'- --cGAcCCGUCGcuguuCGACGCGGA-GCGGa -3'
miRNA:   3'- cuuCU-GGUAGCu----GUUGUGCUUgCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.