miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31905 3' -49.8 NC_006938.1 + 62743 0.73 0.71451
Target:  5'- uGGAGGCC-UCGG--GCACGGAgGCGGc -3'
miRNA:   3'- -CUUCUGGuAGCUguUGUGCUUgCGCC- -5'
31905 3' -49.8 NC_006938.1 + 61563 0.66 0.970454
Target:  5'- aGAGGACCuccaCGAuCAGCGCGccauagguGugGUGGa -3'
miRNA:   3'- -CUUCUGGua--GCU-GUUGUGC--------UugCGCC- -5'
31905 3' -49.8 NC_006938.1 + 59855 0.7 0.835527
Target:  5'- aGGAGGCC-UCGucCAGgAUGAACGCGa -3'
miRNA:   3'- -CUUCUGGuAGCu-GUUgUGCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 59560 0.66 0.970454
Target:  5'- gGGAGACUucacaAUUGAC-GCGCGGcucagaagcgACGCGGc -3'
miRNA:   3'- -CUUCUGG-----UAGCUGuUGUGCU----------UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 59221 0.68 0.936828
Target:  5'- ---uGCCuUCG-CAGCucgGCGAGCGCGGu -3'
miRNA:   3'- cuucUGGuAGCuGUUG---UGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 58947 1.13 0.002963
Target:  5'- cGAAGACCAUCGACAACACGAACGCGGg -3'
miRNA:   3'- -CUUCUGGUAGCUGUUGUGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 57180 0.67 0.959845
Target:  5'- -cAGACUgAUCGcCuucuGgACGAACGCGGa -3'
miRNA:   3'- cuUCUGG-UAGCuGu---UgUGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 56975 0.68 0.925657
Target:  5'- --cGcCCGUUGACAuaACGAACGCuGGg -3'
miRNA:   3'- cuuCuGGUAGCUGUugUGCUUGCG-CC- -5'
31905 3' -49.8 NC_006938.1 + 56421 0.67 0.955789
Target:  5'- aGAAGGCgCAguUCGACGACcuugggcuccuCGA-CGCGGa -3'
miRNA:   3'- -CUUCUG-GU--AGCUGUUGu----------GCUuGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 56360 0.67 0.951464
Target:  5'- -cAGGCCcugCGccugguCAACGCGGACGCGc -3'
miRNA:   3'- cuUCUGGua-GCu-----GUUGUGCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 55437 0.72 0.736073
Target:  5'- aGGAGcCCAggGGCAGaccucuguccuCGCGGACGCGGg -3'
miRNA:   3'- -CUUCuGGUagCUGUU-----------GUGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 54589 0.71 0.817059
Target:  5'- cAAGGCCGUCacCGugGCGAGCGUGa -3'
miRNA:   3'- cUUCUGGUAGcuGUugUGCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 54158 0.7 0.853113
Target:  5'- -uGGGCCAUUGACAcCugGuaccACGUGGc -3'
miRNA:   3'- cuUCUGGUAGCUGUuGugCu---UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 53886 0.69 0.906766
Target:  5'- -uGGcCCGUCGACAACGuuguccauGGCGCGGa -3'
miRNA:   3'- cuUCuGGUAGCUGUUGUgc------UUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 53350 0.7 0.835527
Target:  5'- --cGGCCGUCGACAGCAa-GAC-CGGc -3'
miRNA:   3'- cuuCUGGUAGCUGUUGUgcUUGcGCC- -5'
31905 3' -49.8 NC_006938.1 + 52821 0.73 0.725339
Target:  5'- -cAGGCCAUUGGCAcCACGGACgGCa- -3'
miRNA:   3'- cuUCUGGUAGCUGUuGUGCUUG-CGcc -5'
31905 3' -49.8 NC_006938.1 + 51788 0.68 0.913346
Target:  5'- -cAGACCAUCGAggcgacCAAC-CGGcuGCGCGa -3'
miRNA:   3'- cuUCUGGUAGCU------GUUGuGCU--UGCGCc -5'
31905 3' -49.8 NC_006938.1 + 51559 0.66 0.96717
Target:  5'- ---cGCCAUCGAgGGCGCGGuC-CGGg -3'
miRNA:   3'- cuucUGGUAGCUgUUGUGCUuGcGCC- -5'
31905 3' -49.8 NC_006938.1 + 51103 0.66 0.970454
Target:  5'- gGAAGGCgAUCGuggcgauCAGCACGcg-GCGGu -3'
miRNA:   3'- -CUUCUGgUAGCu------GUUGUGCuugCGCC- -5'
31905 3' -49.8 NC_006938.1 + 49484 0.69 0.892768
Target:  5'- ---cGCCGUCGACGACACcGucuuCGCGa -3'
miRNA:   3'- cuucUGGUAGCUGUUGUG-Cuu--GCGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.