miRNA display CGI


Results 1 - 20 of 79 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31905 3' -49.8 NC_006938.1 + 58947 1.13 0.002963
Target:  5'- cGAAGACCAUCGACAACACGAACGCGGg -3'
miRNA:   3'- -CUUCUGGUAGCUGUUGUGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 5188 0.81 0.310531
Target:  5'- -uGGGCCAgCGGCAGCAgGAACGCGa -3'
miRNA:   3'- cuUCUGGUaGCUGUUGUgCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 30618 0.81 0.310531
Target:  5'- aGGAGGUCGUCGGgAGCACGAACGCGc -3'
miRNA:   3'- -CUUCUGGUAGCUgUUGUGCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 16966 0.8 0.334567
Target:  5'- -cGGACCuccucGUCGGCAGCugGGgaGCGCGGg -3'
miRNA:   3'- cuUCUGG-----UAGCUGUUGugCU--UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 30076 0.77 0.483296
Target:  5'- uGggGAcCCGUCGGCGGCAUGggUcgguucgGCGGa -3'
miRNA:   3'- -CuuCU-GGUAGCUGUUGUGCuuG-------CGCC- -5'
31905 3' -49.8 NC_006938.1 + 48378 0.77 0.505291
Target:  5'- cGGAGACCGUCGGCAcugucucCACGAucgAgGCGGc -3'
miRNA:   3'- -CUUCUGGUAGCUGUu------GUGCU---UgCGCC- -5'
31905 3' -49.8 NC_006938.1 + 12543 0.75 0.570235
Target:  5'- cGGAGGCCccggUGGCAGCGuCGAACGCGc -3'
miRNA:   3'- -CUUCUGGua--GCUGUUGU-GCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 19318 0.73 0.681568
Target:  5'- cGGAGGCCGgaggUGGCAcgguucuuCAUGGACGCGGc -3'
miRNA:   3'- -CUUCUGGUa---GCUGUu-------GUGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 62743 0.73 0.71451
Target:  5'- uGGAGGCC-UCGG--GCACGGAgGCGGc -3'
miRNA:   3'- -CUUCUGGuAGCUguUGUGCUUgCGCC- -5'
31905 3' -49.8 NC_006938.1 + 52821 0.73 0.725339
Target:  5'- -cAGGCCAUUGGCAcCACGGACgGCa- -3'
miRNA:   3'- cuUCUGGUAGCUGUuGUGCUUG-CGcc -5'
31905 3' -49.8 NC_006938.1 + 55437 0.72 0.736073
Target:  5'- aGGAGcCCAggGGCAGaccucuguccuCGCGGACGCGGg -3'
miRNA:   3'- -CUUCuGGUagCUGUU-----------GUGCUUGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 46255 0.72 0.777808
Target:  5'- -cAGGCCA-CGGCGgaguACGCGGugcGCGCGGu -3'
miRNA:   3'- cuUCUGGUaGCUGU----UGUGCU---UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 19848 0.71 0.80752
Target:  5'- uGAAGuCCAagGACcccAGCACGAAgGUGGg -3'
miRNA:   3'- -CUUCuGGUagCUG---UUGUGCUUgCGCC- -5'
31905 3' -49.8 NC_006938.1 + 54589 0.71 0.817059
Target:  5'- cAAGGCCGUCacCGugGCGAGCGUGa -3'
miRNA:   3'- cUUCUGGUAGcuGUugUGCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 8456 0.71 0.817059
Target:  5'- gGAAGGauCCAUCaGGuCGGCGCGGauACGCGGu -3'
miRNA:   3'- -CUUCU--GGUAG-CU-GUUGUGCU--UGCGCC- -5'
31905 3' -49.8 NC_006938.1 + 33113 0.71 0.822688
Target:  5'- cGAGGGCCucaagaugcuggcgGUCGACAucgccaagggcauACGCGAGCG-GGa -3'
miRNA:   3'- -CUUCUGG--------------UAGCUGU-------------UGUGCUUGCgCC- -5'
31905 3' -49.8 NC_006938.1 + 53350 0.7 0.835527
Target:  5'- --cGGCCGUCGACAGCAa-GAC-CGGc -3'
miRNA:   3'- cuuCUGGUAGCUGUUGUgcUUGcGCC- -5'
31905 3' -49.8 NC_006938.1 + 59855 0.7 0.835527
Target:  5'- aGGAGGCC-UCGucCAGgAUGAACGCGa -3'
miRNA:   3'- -CUUCUGGuAGCu-GUUgUGCUUGCGCc -5'
31905 3' -49.8 NC_006938.1 + 34889 0.7 0.835527
Target:  5'- -uGGACUucGUCGACAACACGuuCGCc- -3'
miRNA:   3'- cuUCUGG--UAGCUGUUGUGCuuGCGcc -5'
31905 3' -49.8 NC_006938.1 + 54158 0.7 0.853113
Target:  5'- -uGGGCCAUUGACAcCugGuaccACGUGGc -3'
miRNA:   3'- cuUCUGGUAGCUGUuGugCu---UGCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.