Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31908 | 3' | -54.6 | NC_006938.1 | + | 1892 | 0.67 | 0.712455 |
Target: 5'- cACGGCGCGCUAUgagcCGGCaAAgUUCa- -3' miRNA: 3'- -UGCCGCGCGAUGu---GUCGcUUgAAGcg -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 2028 | 0.68 | 0.690972 |
Target: 5'- gGCGGUGUGaaGC-CAGCGGugUagCGCg -3' miRNA: 3'- -UGCCGCGCgaUGuGUCGCUugAa-GCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 8472 | 0.75 | 0.28558 |
Target: 5'- uCGGCGCGgaUACGCGGUGGGgUUUGCc -3' miRNA: 3'- uGCCGCGCg-AUGUGUCGCUUgAAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 9815 | 0.74 | 0.331058 |
Target: 5'- aGCaGCGCGUaugGCGCGGCGAGgUUCaGCa -3' miRNA: 3'- -UGcCGCGCGa--UGUGUCGCUUgAAG-CG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 10102 | 0.67 | 0.701747 |
Target: 5'- cACGGUGCacaUGC-CGGaCGGugUUCGCa -3' miRNA: 3'- -UGCCGCGcg-AUGuGUC-GCUugAAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 10535 | 0.71 | 0.48674 |
Target: 5'- gUGGUGCcagaCUGCGCGGCGAGCga-GCu -3' miRNA: 3'- uGCCGCGc---GAUGUGUCGCUUGaagCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 10781 | 0.67 | 0.710319 |
Target: 5'- cACGGCGCGCUugcugaccaggcCACGGaccACUUCGa -3' miRNA: 3'- -UGCCGCGCGAu-----------GUGUCgcuUGAAGCg -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 10856 | 0.68 | 0.689892 |
Target: 5'- uACGGCGaggugaacgaccuCGacaugUACAUGGCGAucuACUUCGCa -3' miRNA: 3'- -UGCCGC-------------GCg----AUGUGUCGCU---UGAAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 11078 | 0.71 | 0.50732 |
Target: 5'- uCGGCGCGCUGgaGCGGC--ACaUCGCc -3' miRNA: 3'- uGCCGCGCGAUg-UGUCGcuUGaAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 12197 | 0.68 | 0.680141 |
Target: 5'- aGCGGCGggaagaccgccUGCaGCGCGGCGAAUaUCuGCu -3' miRNA: 3'- -UGCCGC-----------GCGaUGUGUCGCUUGaAG-CG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 17748 | 0.74 | 0.331058 |
Target: 5'- uCGGCGgGCUGCGCGGaGAACgUgGCa -3' miRNA: 3'- uGCCGCgCGAUGUGUCgCUUGaAgCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 17826 | 0.7 | 0.559165 |
Target: 5'- gGCGGCccGCGcCUAUggcaugcggaaggACAGCGAGCUcggcUCGUa -3' miRNA: 3'- -UGCCG--CGC-GAUG-------------UGUCGCUUGA----AGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 20502 | 0.66 | 0.802998 |
Target: 5'- -gGGCGaGUUGC-CAGCGAugUccuugggcaccugUCGCg -3' miRNA: 3'- ugCCGCgCGAUGuGUCGCUugA-------------AGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 20741 | 0.7 | 0.538851 |
Target: 5'- -aGGUGuCGCUgauggaggcggACAaGGUGAACUUCGCg -3' miRNA: 3'- ugCCGC-GCGA-----------UGUgUCGCUUGAAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 22066 | 0.66 | 0.784586 |
Target: 5'- -gGGaGCgGCUGCGCGGCGGcCUggGCa -3' miRNA: 3'- ugCCgCG-CGAUGUGUCGCUuGAagCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 24521 | 0.66 | 0.774663 |
Target: 5'- aGCGGUGCcgucgucCUGCACAGCGGcaguGCcaUUCGg -3' miRNA: 3'- -UGCCGCGc------GAUGUGUCGCU----UG--AAGCg -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 25036 | 0.69 | 0.592732 |
Target: 5'- cGCGGCGUuCaGgGCGGCGAugUcCGCg -3' miRNA: 3'- -UGCCGCGcGaUgUGUCGCUugAaGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 27905 | 0.67 | 0.733625 |
Target: 5'- gACGGacagcaucuccuCGCGCcACACcucGGCGGACUUCu- -3' miRNA: 3'- -UGCC------------GCGCGaUGUG---UCGCUUGAAGcg -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 36309 | 0.66 | 0.80395 |
Target: 5'- uUGGaucccaCGCGCccagUGCGCAGCGAGCggaucUUGCc -3' miRNA: 3'- uGCC------GCGCG----AUGUGUCGCUUGa----AGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 38082 | 0.68 | 0.690972 |
Target: 5'- cGCGGuCGCGgUACuugaAGCuguGCUUCGCc -3' miRNA: 3'- -UGCC-GCGCgAUGug--UCGcu-UGAAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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