Results 1 - 20 of 34 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
31908 | 3' | -54.6 | NC_006938.1 | + | 62195 | 1.1 | 0.001106 |
Target: 5'- cACGGCGCGCUACACAGCGAACUUCGCc -3' miRNA: 3'- -UGCCGCGCGAUGUGUCGCUUGAAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 46272 | 0.68 | 0.647419 |
Target: 5'- cGCGGUGCGCgcgguGGCGAACga-GCu -3' miRNA: 3'- -UGCCGCGCGaugugUCGCUUGaagCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 10856 | 0.68 | 0.689892 |
Target: 5'- uACGGCGaggugaacgaccuCGacaugUACAUGGCGAucuACUUCGCa -3' miRNA: 3'- -UGCCGC-------------GCg----AUGUGUCGCU---UGAAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 10102 | 0.67 | 0.701747 |
Target: 5'- cACGGUGCacaUGC-CGGaCGGugUUCGCa -3' miRNA: 3'- -UGCCGCGcg-AUGuGUC-GCUugAAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 10781 | 0.67 | 0.710319 |
Target: 5'- cACGGCGCGCUugcugaccaggcCACGGaccACUUCGa -3' miRNA: 3'- -UGCCGCGCGAu-----------GUGUCgcuUGAAGCg -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 1892 | 0.67 | 0.712455 |
Target: 5'- cACGGCGCGCUAUgagcCGGCaAAgUUCa- -3' miRNA: 3'- -UGCCGCGCGAUGu---GUCGcUUgAAGcg -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 50335 | 0.66 | 0.764594 |
Target: 5'- gUGGCGCGC-GCACGGUcAAC--CGCu -3' miRNA: 3'- uGCCGCGCGaUGUGUCGcUUGaaGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 20502 | 0.66 | 0.802998 |
Target: 5'- -gGGCGaGUUGC-CAGCGAugUccuugggcaccugUCGCg -3' miRNA: 3'- ugCCGCgCGAUGuGUCGCUugA-------------AGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 50840 | 0.66 | 0.80395 |
Target: 5'- -gGGUGUGacGCGgGGCGAGCUcCGCc -3' miRNA: 3'- ugCCGCGCgaUGUgUCGCUUGAaGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 41992 | 0.69 | 0.636471 |
Target: 5'- -gGGCGaCGUcgGCACGGCGAACcUUGa -3' miRNA: 3'- ugCCGC-GCGa-UGUGUCGCUUGaAGCg -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 59423 | 0.69 | 0.614571 |
Target: 5'- gUGGCGcCGCcggACcCGGCcGACUUCGCc -3' miRNA: 3'- uGCCGC-GCGa--UGuGUCGcUUGAAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 62865 | 0.78 | 0.193582 |
Target: 5'- gACGGUGUGggaggUACACAGCGAACUUCa- -3' miRNA: 3'- -UGCCGCGCg----AUGUGUCGCUUGAAGcg -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 52434 | 0.74 | 0.347358 |
Target: 5'- cCGGCcCGUg--ACAGUGAACUUCGCg -3' miRNA: 3'- uGCCGcGCGaugUGUCGCUUGAAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 50761 | 0.73 | 0.381648 |
Target: 5'- cCGGgGCaCUGCGCGGCGAcgaGCUcCGCu -3' miRNA: 3'- uGCCgCGcGAUGUGUCGCU---UGAaGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 55405 | 0.71 | 0.496982 |
Target: 5'- uCGGCGCGCUcgccGCagGCGGCcuGGGCUucUCGCc -3' miRNA: 3'- uGCCGCGCGA----UG--UGUCG--CUUGA--AGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 11078 | 0.71 | 0.50732 |
Target: 5'- uCGGCGCGCUGgaGCGGC--ACaUCGCc -3' miRNA: 3'- uGCCGCGCGAUg-UGUCGcuUGaAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 20741 | 0.7 | 0.538851 |
Target: 5'- -aGGUGuCGCUgauggaggcggACAaGGUGAACUUCGCg -3' miRNA: 3'- ugCCGC-GCGA-----------UGUgUCGCUUGAAGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 17826 | 0.7 | 0.559165 |
Target: 5'- gGCGGCccGCGcCUAUggcaugcggaaggACAGCGAGCUcggcUCGUa -3' miRNA: 3'- -UGCCG--CGC-GAUG-------------UGUCGCUUGA----AGCG- -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 61530 | 0.69 | 0.581857 |
Target: 5'- --cGCGCGCUACACcGCuGGCUUCa- -3' miRNA: 3'- ugcCGCGCGAUGUGuCGcUUGAAGcg -5' |
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31908 | 3' | -54.6 | NC_006938.1 | + | 8472 | 0.75 | 0.28558 |
Target: 5'- uCGGCGCGgaUACGCGGUGGGgUUUGCc -3' miRNA: 3'- uGCCGCGCg-AUGUGUCGCUUgAAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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