miRNA display CGI


Results 21 - 34 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
31908 3' -54.6 NC_006938.1 + 61530 0.69 0.581857
Target:  5'- --cGCGCGCUACACcGCuGGCUUCa- -3'
miRNA:   3'- ugcCGCGCGAUGUGuCGcUUGAAGcg -5'
31908 3' -54.6 NC_006938.1 + 55943 0.7 0.56024
Target:  5'- -gGGC-CGCcuugccagugUACGCGGCGAACUUCa- -3'
miRNA:   3'- ugCCGcGCG----------AUGUGUCGCUUGAAGcg -5'
31908 3' -54.6 NC_006938.1 + 17826 0.7 0.559165
Target:  5'- gGCGGCccGCGcCUAUggcaugcggaaggACAGCGAGCUcggcUCGUa -3'
miRNA:   3'- -UGCCG--CGC-GAUG-------------UGUCGCUUGA----AGCG- -5'
31908 3' -54.6 NC_006938.1 + 20741 0.7 0.538851
Target:  5'- -aGGUGuCGCUgauggaggcggACAaGGUGAACUUCGCg -3'
miRNA:   3'- ugCCGC-GCGA-----------UGUgUCGCUUGAAGCG- -5'
31908 3' -54.6 NC_006938.1 + 11078 0.71 0.50732
Target:  5'- uCGGCGCGCUGgaGCGGC--ACaUCGCc -3'
miRNA:   3'- uGCCGCGCGAUg-UGUCGcuUGaAGCG- -5'
31908 3' -54.6 NC_006938.1 + 55405 0.71 0.496982
Target:  5'- uCGGCGCGCUcgccGCagGCGGCcuGGGCUucUCGCc -3'
miRNA:   3'- uGCCGCGCGA----UG--UGUCG--CUUGA--AGCG- -5'
31908 3' -54.6 NC_006938.1 + 10535 0.71 0.48674
Target:  5'- gUGGUGCcagaCUGCGCGGCGAGCga-GCu -3'
miRNA:   3'- uGCCGCGc---GAUGUGUCGCUUGaagCG- -5'
31908 3' -54.6 NC_006938.1 + 50761 0.73 0.381648
Target:  5'- cCGGgGCaCUGCGCGGCGAcgaGCUcCGCu -3'
miRNA:   3'- uGCCgCGcGAUGUGUCGCU---UGAaGCG- -5'
31908 3' -54.6 NC_006938.1 + 52434 0.74 0.347358
Target:  5'- cCGGCcCGUg--ACAGUGAACUUCGCg -3'
miRNA:   3'- uGCCGcGCGaugUGUCGCUUGAAGCG- -5'
31908 3' -54.6 NC_006938.1 + 17748 0.74 0.331058
Target:  5'- uCGGCGgGCUGCGCGGaGAACgUgGCa -3'
miRNA:   3'- uGCCGCgCGAUGUGUCgCUUGaAgCG- -5'
31908 3' -54.6 NC_006938.1 + 9815 0.74 0.331058
Target:  5'- aGCaGCGCGUaugGCGCGGCGAGgUUCaGCa -3'
miRNA:   3'- -UGcCGCGCGa--UGUGUCGCUUgAAG-CG- -5'
31908 3' -54.6 NC_006938.1 + 8472 0.75 0.28558
Target:  5'- uCGGCGCGgaUACGCGGUGGGgUUUGCc -3'
miRNA:   3'- uGCCGCGCg-AUGUGUCGCUUgAAGCG- -5'
31908 3' -54.6 NC_006938.1 + 62865 0.78 0.193582
Target:  5'- gACGGUGUGggaggUACACAGCGAACUUCa- -3'
miRNA:   3'- -UGCCGCGCg----AUGUGUCGCUUGAAGcg -5'
31908 3' -54.6 NC_006938.1 + 62195 1.1 0.001106
Target:  5'- cACGGCGCGCUACACAGCGAACUUCGCc -3'
miRNA:   3'- -UGCCGCGCGAUGUGUCGCUUGAAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.